miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13144 5' -55.5 NC_003401.1 + 127835 0.68 0.80021
Target:  5'- cGCuGgUGGUGGCGCUGuGGACGGUUUu -3'
miRNA:   3'- aCG-CgACCGCUGCGGCcUUUGCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 107785 0.68 0.80021
Target:  5'- cGCGCccGGUGGCGCggaccCGGGAGCGuggcgUCu -3'
miRNA:   3'- aCGCGa-CCGCUGCG-----GCCUUUGCua---AG- -5'
13144 5' -55.5 NC_003401.1 + 69715 0.69 0.785496
Target:  5'- aGUGUUGGCGAUaucggccggacucugGCCGGAcccuGACGGg-- -3'
miRNA:   3'- aCGCGACCGCUG---------------CGGCCU----UUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 8909 0.69 0.781759
Target:  5'- gGCGCccugUGGCGGCGaCCGGcuGACGcgccgUCg -3'
miRNA:   3'- aCGCG----ACCGCUGC-GGCCu-UUGCua---AG- -5'
13144 5' -55.5 NC_003401.1 + 89155 0.69 0.781759
Target:  5'- cUGCGUUGcugggaacaGUGuCGCCGGGAACGGg-- -3'
miRNA:   3'- -ACGCGAC---------CGCuGCGGCCUUUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 20291 0.69 0.753071
Target:  5'- aUGCuGCUGGaCGACGCgccCGGGGACGc--- -3'
miRNA:   3'- -ACG-CGACC-GCUGCG---GCCUUUGCuaag -5'
13144 5' -55.5 NC_003401.1 + 132657 0.69 0.743277
Target:  5'- gGCGC-GGCGcCGCCGGGcuCGGc-- -3'
miRNA:   3'- aCGCGaCCGCuGCGGCCUuuGCUaag -5'
13144 5' -55.5 NC_003401.1 + 13863 0.69 0.743277
Target:  5'- gGCGUUGGUG-CGCCGGuuuAGCGc--- -3'
miRNA:   3'- aCGCGACCGCuGCGGCCu--UUGCuaag -5'
13144 5' -55.5 NC_003401.1 + 51752 0.7 0.692999
Target:  5'- cUGCGCgcaaccGCGAgGCCucgaacggcGGGGACGGUUCa -3'
miRNA:   3'- -ACGCGac----CGCUgCGG---------CCUUUGCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 111366 0.7 0.692999
Target:  5'- aGUGuCUGGCcgcacacccgGACGCCGGuc-CGGUUCu -3'
miRNA:   3'- aCGC-GACCG----------CUGCGGCCuuuGCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 43422 0.7 0.682749
Target:  5'- cUGUGaCUGGCGgcgaGCGUgGGAAACGcUUCu -3'
miRNA:   3'- -ACGC-GACCGC----UGCGgCCUUUGCuAAG- -5'
13144 5' -55.5 NC_003401.1 + 132523 0.71 0.66213
Target:  5'- gGCGCggGGCG--GCCGGggGCGGc-- -3'
miRNA:   3'- aCGCGa-CCGCugCGGCCuuUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 121158 0.71 0.641411
Target:  5'- gGCGCgGGgGGCGCgGGggGCGc--- -3'
miRNA:   3'- aCGCGaCCgCUGCGgCCuuUGCuaag -5'
13144 5' -55.5 NC_003401.1 + 126874 0.72 0.589623
Target:  5'- cUGC-CUGGUGAUcgGCUGGggGCGAUa- -3'
miRNA:   3'- -ACGcGACCGCUG--CGGCCuuUGCUAag -5'
13144 5' -55.5 NC_003401.1 + 11226 0.73 0.545678
Target:  5'- aGCGCgacguUGGCGGgGCCGGGAaagagaucgcucugGCGcgUCa -3'
miRNA:   3'- aCGCG-----ACCGCUgCGGCCUU--------------UGCuaAG- -5'
13144 5' -55.5 NC_003401.1 + 121687 0.74 0.47003
Target:  5'- aUGCGaugcgGGgGAUGCCGGGGACGAc-- -3'
miRNA:   3'- -ACGCga---CCgCUGCGGCCUUUGCUaag -5'
13144 5' -55.5 NC_003401.1 + 78234 0.77 0.340254
Target:  5'- aGCGgUGGCGGCGCCGGcAGGCa---- -3'
miRNA:   3'- aCGCgACCGCUGCGGCC-UUUGcuaag -5'
13144 5' -55.5 NC_003401.1 + 122767 0.77 0.317612
Target:  5'- cUGCuGCUGGCGACGCUuGccACGGUUCg -3'
miRNA:   3'- -ACG-CGACCGCUGCGGcCuuUGCUAAG- -5'
13144 5' -55.5 NC_003401.1 + 102938 1.1 0.002188
Target:  5'- gUGCGCUGGCGACGCCGGAAACGAUUCg -3'
miRNA:   3'- -ACGCGACCGCUGCGGCCUUUGCUAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.