miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13145 3' -52.3 NC_003401.1 + 39482 0.66 0.978697
Target:  5'- cUGGAaacgucgcuAGCGGUU-GCGUGCGUUaacaCCGa -3'
miRNA:   3'- -ACCUc--------UCGUCAAuUGCACGCAAg---GGC- -5'
13145 3' -52.3 NC_003401.1 + 86286 0.66 0.976241
Target:  5'- gUGcGAGGGUAGauacaGAUGUGC-UUCCCGu -3'
miRNA:   3'- -AC-CUCUCGUCaa---UUGCACGcAAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 8993 0.66 0.973583
Target:  5'- aGGuuuccGCAGUggaaAACGuUGUGUUCCCGu -3'
miRNA:   3'- aCCucu--CGUCAa---UUGC-ACGCAAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 16 0.68 0.944254
Target:  5'- aGGGGAGCGGggGACaggggacggcguGUGCGUgCuuGu -3'
miRNA:   3'- aCCUCUCGUCaaUUG------------CACGCAaGggC- -5'
13145 3' -52.3 NC_003401.1 + 132751 0.68 0.944254
Target:  5'- aGGGGAGCGGggGACaggggacggcguGUGCGUgCuuGu -3'
miRNA:   3'- aCCUCUCGUCaaUUG------------CACGCAaGggC- -5'
13145 3' -52.3 NC_003401.1 + 72996 0.68 0.939499
Target:  5'- cGGAGGGguuuguagucaCAGgaGGCGUGCccGUUCCUGu -3'
miRNA:   3'- aCCUCUC-----------GUCaaUUGCACG--CAAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 12671 0.68 0.934492
Target:  5'- gGGAGAGCGGg-GACGUGaaggUCgCCGu -3'
miRNA:   3'- aCCUCUCGUCaaUUGCACgca-AG-GGC- -5'
13145 3' -52.3 NC_003401.1 + 116648 0.68 0.934492
Target:  5'- uUGGAGGGCGGUUgGACGcuggcGCGUUggCCGu -3'
miRNA:   3'- -ACCUCUCGUCAA-UUGCa----CGCAAg-GGC- -5'
13145 3' -52.3 NC_003401.1 + 109155 0.68 0.929229
Target:  5'- aGGAugGGGCAGaaaUUAACGUGCaagCCCa -3'
miRNA:   3'- aCCU--CUCGUC---AAUUGCACGcaaGGGc -5'
13145 3' -52.3 NC_003401.1 + 84054 0.69 0.917938
Target:  5'- aGG-GGGCGGgcAGCG-GCaUUCCCGg -3'
miRNA:   3'- aCCuCUCGUCaaUUGCaCGcAAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 110140 0.7 0.878035
Target:  5'- uUGGAGAGguGUcagGACG-GgGcUCCCGu -3'
miRNA:   3'- -ACCUCUCguCAa--UUGCaCgCaAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 120796 0.75 0.630696
Target:  5'- gUGGGGGGCGGaugggUGAUGU-CGUUCCCa -3'
miRNA:   3'- -ACCUCUCGUCa----AUUGCAcGCAAGGGc -5'
13145 3' -52.3 NC_003401.1 + 114149 0.79 0.393186
Target:  5'- aGGAGGGCGGUUAACGaGCGauauacauaUUCCCu -3'
miRNA:   3'- aCCUCUCGUCAAUUGCaCGC---------AAGGGc -5'
13145 3' -52.3 NC_003401.1 + 114347 0.88 0.11805
Target:  5'- gGGAGGGCGGUcAGCGcGCGUUCCCGu -3'
miRNA:   3'- aCCUCUCGUCAaUUGCaCGCAAGGGC- -5'
13145 3' -52.3 NC_003401.1 + 113157 1.09 0.00561
Target:  5'- gUGGAGAGCAGUUAACGUGCGUUCCCGu -3'
miRNA:   3'- -ACCUCUCGUCAAUUGCACGCAAGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.