Results 1 - 15 of 15 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13145 | 3' | -52.3 | NC_003401.1 | + | 16 | 0.68 | 0.944254 |
Target: 5'- aGGGGAGCGGggGACaggggacggcguGUGCGUgCuuGu -3' miRNA: 3'- aCCUCUCGUCaaUUG------------CACGCAaGggC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 8993 | 0.66 | 0.973583 |
Target: 5'- aGGuuuccGCAGUggaaAACGuUGUGUUCCCGu -3' miRNA: 3'- aCCucu--CGUCAa---UUGC-ACGCAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 12671 | 0.68 | 0.934492 |
Target: 5'- gGGAGAGCGGg-GACGUGaaggUCgCCGu -3' miRNA: 3'- aCCUCUCGUCaaUUGCACgca-AG-GGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 39482 | 0.66 | 0.978697 |
Target: 5'- cUGGAaacgucgcuAGCGGUU-GCGUGCGUUaacaCCGa -3' miRNA: 3'- -ACCUc--------UCGUCAAuUGCACGCAAg---GGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 72996 | 0.68 | 0.939499 |
Target: 5'- cGGAGGGguuuguagucaCAGgaGGCGUGCccGUUCCUGu -3' miRNA: 3'- aCCUCUC-----------GUCaaUUGCACG--CAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 84054 | 0.69 | 0.917938 |
Target: 5'- aGG-GGGCGGgcAGCG-GCaUUCCCGg -3' miRNA: 3'- aCCuCUCGUCaaUUGCaCGcAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 86286 | 0.66 | 0.976241 |
Target: 5'- gUGcGAGGGUAGauacaGAUGUGC-UUCCCGu -3' miRNA: 3'- -AC-CUCUCGUCaa---UUGCACGcAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 109155 | 0.68 | 0.929229 |
Target: 5'- aGGAugGGGCAGaaaUUAACGUGCaagCCCa -3' miRNA: 3'- aCCU--CUCGUC---AAUUGCACGcaaGGGc -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 110140 | 0.7 | 0.878035 |
Target: 5'- uUGGAGAGguGUcagGACG-GgGcUCCCGu -3' miRNA: 3'- -ACCUCUCguCAa--UUGCaCgCaAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 113157 | 1.09 | 0.00561 |
Target: 5'- gUGGAGAGCAGUUAACGUGCGUUCCCGu -3' miRNA: 3'- -ACCUCUCGUCAAUUGCACGCAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 114149 | 0.79 | 0.393186 |
Target: 5'- aGGAGGGCGGUUAACGaGCGauauacauaUUCCCu -3' miRNA: 3'- aCCUCUCGUCAAUUGCaCGC---------AAGGGc -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 114347 | 0.88 | 0.11805 |
Target: 5'- gGGAGGGCGGUcAGCGcGCGUUCCCGu -3' miRNA: 3'- aCCUCUCGUCAaUUGCaCGCAAGGGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 116648 | 0.68 | 0.934492 |
Target: 5'- uUGGAGGGCGGUUgGACGcuggcGCGUUggCCGu -3' miRNA: 3'- -ACCUCUCGUCAA-UUGCa----CGCAAg-GGC- -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 120796 | 0.75 | 0.630696 |
Target: 5'- gUGGGGGGCGGaugggUGAUGU-CGUUCCCa -3' miRNA: 3'- -ACCUCUCGUCa----AUUGCAcGCAAGGGc -5' |
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13145 | 3' | -52.3 | NC_003401.1 | + | 132751 | 0.68 | 0.944254 |
Target: 5'- aGGGGAGCGGggGACaggggacggcguGUGCGUgCuuGu -3' miRNA: 3'- aCCUCUCGUCaaUUG------------CACGCAaGggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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