Results 1 - 18 of 18 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13147 | 3' | -45.8 | NC_003401.1 | + | 118822 | 0.66 | 0.99991 |
Target: 5'- -gUUGCGGgggucauacggccCACCGGCGACACc---- -3' miRNA: 3'- caAACGCCa------------GUGGUUGUUGUGauaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 78228 | 0.66 | 0.99989 |
Target: 5'- ---gGCGG-CGCCGGCAggcacaccugaaaGCACUGUc- -3' miRNA: 3'- caaaCGCCaGUGGUUGU-------------UGUGAUAac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 113133 | 0.66 | 0.99994 |
Target: 5'- ---cGCGGUucacCGCCAACAACAa----- -3' miRNA: 3'- caaaCGCCA----GUGGUUGUUGUgauaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 32769 | 0.66 | 0.99992 |
Target: 5'- ---gGgGGUCAUgGguguuggaaaaACAACGCUAUUGa -3' miRNA: 3'- caaaCgCCAGUGgU-----------UGUUGUGAUAAC- -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 106346 | 0.67 | 0.999695 |
Target: 5'- uGUUUGauGUUACCGACAGCGUUuUUGg -3' miRNA: 3'- -CAAACgcCAGUGGUUGUUGUGAuAAC- -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 130772 | 0.67 | 0.999757 |
Target: 5'- -cUUGUGGg-ACCAACAuggauagGCACUGUUa -3' miRNA: 3'- caAACGCCagUGGUUGU-------UGUGAUAAc -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 119624 | 0.68 | 0.999212 |
Target: 5'- --gUGCGGcgcUCGCCGACAcccucuucuaccuACACUAg-- -3' miRNA: 3'- caaACGCC---AGUGGUUGU-------------UGUGAUaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 20407 | 0.68 | 0.999045 |
Target: 5'- ---cGCGGUUGCCGGCc-CACUGggGg -3' miRNA: 3'- caaaCGCCAGUGGUUGuuGUGAUaaC- -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 113215 | 0.68 | 0.999509 |
Target: 5'- ---gGCGuucuacguUCACgAACAACACUGUUGa -3' miRNA: 3'- caaaCGCc-------AGUGgUUGUUGUGAUAAC- -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 122542 | 0.68 | 0.999045 |
Target: 5'- ---cGCGGuUCGCCGGCGACAa----- -3' miRNA: 3'- caaaCGCC-AGUGGUUGUUGUgauaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 23699 | 0.68 | 0.999382 |
Target: 5'- ---gGCGG--ACCGGCAGCGCcgGUUGg -3' miRNA: 3'- caaaCGCCagUGGUUGUUGUGa-UAAC- -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 21613 | 0.69 | 0.998559 |
Target: 5'- ---cGUGGUCGCCG-CGGCACg---- -3' miRNA: 3'- caaaCGCCAGUGGUuGUUGUGauaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 89328 | 0.69 | 0.997403 |
Target: 5'- ----cCGGUCACCcguucccGGCGACACUGUUc -3' miRNA: 3'- caaacGCCAGUGG-------UUGUUGUGAUAAc -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 77134 | 0.71 | 0.991979 |
Target: 5'- --aUGCGGUCAuCCGGaaagaAACGCUGUa- -3' miRNA: 3'- caaACGCCAGU-GGUUg----UUGUGAUAac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 108363 | 0.71 | 0.99309 |
Target: 5'- --gUGCGuGcUCGCCAACAACGCg---- -3' miRNA: 3'- caaACGC-C-AGUGGUUGUUGUGauaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 1789 | 0.76 | 0.895079 |
Target: 5'- ---aGCGGUCAUCAACggUACUAc-- -3' miRNA: 3'- caaaCGCCAGUGGUUGuuGUGAUaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 126857 | 0.77 | 0.864134 |
Target: 5'- ---gGCGGUCACCAACAucAUGCUAg-- -3' miRNA: 3'- caaaCGCCAGUGGUUGU--UGUGAUaac -5' |
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13147 | 3' | -45.8 | NC_003401.1 | + | 113414 | 1.1 | 0.02182 |
Target: 5'- aGUUUGCGGUCACCAACAACACUAUUGu -3' miRNA: 3'- -CAAACGCCAGUGGUUGUUGUGAUAAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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