miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13148 3' -56.6 NC_003401.1 + 27760 0.67 0.84188
Target:  5'- cCUCUGcccCCCGcgcuGGCGCGUGCCCGc -3'
miRNA:   3'- -GGGGCcuuGGGUuu--CUGUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 128454 0.67 0.837028
Target:  5'- cUCCCGGuGacauugcaauccaccGCCUGGAGAC-CGuUGCCCGa -3'
miRNA:   3'- -GGGGCC-U---------------UGGGUUUCUGuGC-ACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 132539 0.67 0.833757
Target:  5'- gCCCGGGGCCCcacAAGcCGCG-GCgCGc -3'
miRNA:   3'- gGGGCCUUGGGu--UUCuGUGCaCGgGC- -5'
13148 3' -56.6 NC_003401.1 + 132208 0.67 0.833757
Target:  5'- -gCCGG-GCCCGGAGGCGCccgGCCgGc -3'
miRNA:   3'- ggGGCCuUGGGUUUCUGUGca-CGGgC- -5'
13148 3' -56.6 NC_003401.1 + 48011 0.67 0.832934
Target:  5'- gUCCGGAccacgGCCCGGacGGACcguccccGCG-GCCCGg -3'
miRNA:   3'- gGGGCCU-----UGGGUU--UCUG-------UGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 132470 0.67 0.825454
Target:  5'- gCCgGGAGCCgGggGAGGCcgGCGgcGCCCGg -3'
miRNA:   3'- gGGgCCUUGGgU--UUCUG--UGCa-CGGGC- -5'
13148 3' -56.6 NC_003401.1 + 14229 0.68 0.816979
Target:  5'- aCCgCGGAcGCCCGGGGGCGCuagaggGUGUCgGg -3'
miRNA:   3'- -GGgGCCU-UGGGUUUCUGUG------CACGGgC- -5'
13148 3' -56.6 NC_003401.1 + 132553 0.68 0.816979
Target:  5'- gCCCCGcGAACCgAAA---GCG-GCCCGg -3'
miRNA:   3'- -GGGGC-CUUGGgUUUcugUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 798 0.68 0.816979
Target:  5'- gUCCGaGGGCCagaCGAGGACACGgGaCCCGg -3'
miRNA:   3'- gGGGC-CUUGG---GUUUCUGUGCaC-GGGC- -5'
13148 3' -56.6 NC_003401.1 + 89109 0.68 0.808339
Target:  5'- uCCCUGccAGCCCuacGGCGUGUGCCCGa -3'
miRNA:   3'- -GGGGCc-UUGGGuuuCUGUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 29463 0.68 0.807466
Target:  5'- uCCaCCGGAaccuuacGCCCGAGGACAauauCGU-CCCu -3'
miRNA:   3'- -GG-GGCCU-------UGGGUUUCUGU----GCAcGGGc -5'
13148 3' -56.6 NC_003401.1 + 133539 0.68 0.799543
Target:  5'- aCCCGGGccucucccccGCCCGGaccgccGGGCACccgGCCCa -3'
miRNA:   3'- gGGGCCU----------UGGGUU------UCUGUGca-CGGGc -5'
13148 3' -56.6 NC_003401.1 + 22834 0.68 0.799543
Target:  5'- gCCUGGuuUCCGucGAgGCGgGCCCGg -3'
miRNA:   3'- gGGGCCuuGGGUuuCUgUGCaCGGGC- -5'
13148 3' -56.6 NC_003401.1 + 49255 0.68 0.798655
Target:  5'- gCCaCGGAAUCUGucgccauAAGGgACGUGCCUGg -3'
miRNA:   3'- gGG-GCCUUGGGU-------UUCUgUGCACGGGC- -5'
13148 3' -56.6 NC_003401.1 + 115644 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 116347 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 116283 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 116027 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 116219 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5'
13148 3' -56.6 NC_003401.1 + 115963 0.68 0.796875
Target:  5'- aCCCCGGAgccgagccgcccccACCCGGAGcCAC---CCCGg -3'
miRNA:   3'- -GGGGCCU--------------UGGGUUUCuGUGcacGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.