miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13151 3' -56.6 NC_003401.1 + 9025 0.66 0.87592
Target:  5'- uGCGGuCCAcGCcGCGCCCCGc----- -3'
miRNA:   3'- gCGCU-GGUaCGaCGCGGGGCauaagc -5'
13151 3' -56.6 NC_003401.1 + 62616 0.67 0.836462
Target:  5'- gGuCGACaCGUaCUGCGCCCuaaaggaCGUGUUCGc -3'
miRNA:   3'- gC-GCUG-GUAcGACGCGGG-------GCAUAAGC- -5'
13151 3' -56.6 NC_003401.1 + 21781 0.67 0.828971
Target:  5'- cCGCGGCCGUccGCUGCGCgugCCGcgg-CGa -3'
miRNA:   3'- -GCGCUGGUA--CGACGCGg--GGCauaaGC- -5'
13151 3' -56.6 NC_003401.1 + 118214 0.67 0.828971
Target:  5'- uCGgGACCAUGgUGCGCaaaacgucgCCCGgg-UCa -3'
miRNA:   3'- -GCgCUGGUACgACGCG---------GGGCauaAGc -5'
13151 3' -56.6 NC_003401.1 + 122576 0.67 0.817897
Target:  5'- aGCGGCCGcgcGCUGCGCggcggaacagacuuUCCGcgGUUCGc -3'
miRNA:   3'- gCGCUGGUa--CGACGCG--------------GGGCa-UAAGC- -5'
13151 3' -56.6 NC_003401.1 + 61343 0.67 0.811814
Target:  5'- uGCGGCUAUGgUGguCGCgCCCGUGaUCa -3'
miRNA:   3'- gCGCUGGUACgAC--GCG-GGGCAUaAGc -5'
13151 3' -56.6 NC_003401.1 + 132384 0.67 0.802986
Target:  5'- cCGCGGCCcgGCggcgGCGCCggCCGgg--CGc -3'
miRNA:   3'- -GCGCUGGuaCGa---CGCGG--GGCauaaGC- -5'
13151 3' -56.6 NC_003401.1 + 121952 0.68 0.77561
Target:  5'- gCGCGGCCGUGCcaCGCCCCc------ -3'
miRNA:   3'- -GCGCUGGUACGacGCGGGGcauaagc -5'
13151 3' -56.6 NC_003401.1 + 125700 0.68 0.77561
Target:  5'- gGCGGCCAU-CaGCGCCCUGggaagCGg -3'
miRNA:   3'- gCGCUGGUAcGaCGCGGGGCauaa-GC- -5'
13151 3' -56.6 NC_003401.1 + 39225 0.7 0.677406
Target:  5'- aCGCGuGCCGUGCgcuccgGCGUCUgGUAUUgGg -3'
miRNA:   3'- -GCGC-UGGUACGa-----CGCGGGgCAUAAgC- -5'
13151 3' -56.6 NC_003401.1 + 8896 0.73 0.467765
Target:  5'- gGCGACCG-GCUGaCGCgCCGUcgUCu -3'
miRNA:   3'- gCGCUGGUaCGAC-GCGgGGCAuaAGc -5'
13151 3' -56.6 NC_003401.1 + 52643 0.75 0.379649
Target:  5'- uGCGuACCAUGUcGCGCCCUGaUAUUCc -3'
miRNA:   3'- gCGC-UGGUACGaCGCGGGGC-AUAAGc -5'
13151 3' -56.6 NC_003401.1 + 116710 1.09 0.002479
Target:  5'- cCGCGACCAUGCUGCGCCCCGUAUUCGu -3'
miRNA:   3'- -GCGCUGGUACGACGCGGGGCAUAAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.