miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13151 5' -50.6 NC_003401.1 + 30779 0.66 0.989642
Target:  5'- uUUCGAGUUGGCGGCaacgggguacCUGUcCGGUg- -3'
miRNA:   3'- -AAGCUUAAUUGCCGc---------GACGuGCCAac -5'
13151 5' -50.6 NC_003401.1 + 122583 0.66 0.986543
Target:  5'- uUUCGGc--AGCGGCcgcgcGCUGCGCGGcgGa -3'
miRNA:   3'- -AAGCUuaaUUGCCG-----CGACGUGCCaaC- -5'
13151 5' -50.6 NC_003401.1 + 116550 0.66 0.986543
Target:  5'- -aCGAAUacGgGGCGCaGCAUGGUc- -3'
miRNA:   3'- aaGCUUAauUgCCGCGaCGUGCCAac -5'
13151 5' -50.6 NC_003401.1 + 72112 0.66 0.982778
Target:  5'- gUUCGAcgcaGUgcccguAUGGaCGCUGCACGGg-- -3'
miRNA:   3'- -AAGCU----UAau----UGCC-GCGACGUGCCaac -5'
13151 5' -50.6 NC_003401.1 + 14302 0.67 0.98062
Target:  5'- cUUCGAG--AACGGUGCU-CGCGGa-- -3'
miRNA:   3'- -AAGCUUaaUUGCCGCGAcGUGCCaac -5'
13151 5' -50.6 NC_003401.1 + 127833 0.67 0.969947
Target:  5'- cUCGcuggUggUGGCGCUGUggACGGUUu -3'
miRNA:   3'- aAGCuua-AuuGCCGCGACG--UGCCAAc -5'
13151 5' -50.6 NC_003401.1 + 57193 0.67 0.969947
Target:  5'- -cCGAAUUuuuuAgGGCGCUGCACaauaaGUUGu -3'
miRNA:   3'- aaGCUUAAu---UgCCGCGACGUGc----CAAC- -5'
13151 5' -50.6 NC_003401.1 + 119009 0.68 0.955614
Target:  5'- -gCGAGgagGGCGGCGaugcGCACGGggGa -3'
miRNA:   3'- aaGCUUaa-UUGCCGCga--CGUGCCaaC- -5'
13151 5' -50.6 NC_003401.1 + 17836 0.68 0.95141
Target:  5'- uUUCGGAUgacGCGGCGCacagggacGCGCGGa-- -3'
miRNA:   3'- -AAGCUUAau-UGCCGCGa-------CGUGCCaac -5'
13151 5' -50.6 NC_003401.1 + 7863 0.69 0.946947
Target:  5'- -aCGuguAUUGGCaGGCGCcgUGCGCGGUg- -3'
miRNA:   3'- aaGCu--UAAUUG-CCGCG--ACGUGCCAac -5'
13151 5' -50.6 NC_003401.1 + 89812 0.72 0.839907
Target:  5'- -gCGGAgcUGACGGUGCgGCGCGGUc- -3'
miRNA:   3'- aaGCUUa-AUUGCCGCGaCGUGCCAac -5'
13151 5' -50.6 NC_003401.1 + 19298 0.78 0.499598
Target:  5'- -aCGGuGUUGACGGCGCUGCGCuGGUc- -3'
miRNA:   3'- aaGCU-UAAUUGCCGCGACGUG-CCAac -5'
13151 5' -50.6 NC_003401.1 + 116672 0.98 0.038864
Target:  5'- aUUCGAAUauACGGCGCUGCACGGUUGg -3'
miRNA:   3'- -AAGCUUAauUGCCGCGACGUGCCAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.