Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13152 | 3' | -59.6 | NC_003401.1 | + | 126023 | 0.66 | 0.708442 |
Target: 5'- uGGGGGCCCAGCUU-CAcgCCCGCg- -3' miRNA: 3'- cCUCCUGGGUCGGAcGUcaGGGUGac -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 126780 | 0.66 | 0.708442 |
Target: 5'- cGGAGGACgaCCAGgccuggcuCCUGCAG-CacaCACUGu -3' miRNA: 3'- -CCUCCUG--GGUC--------GGACGUCaGg--GUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 66666 | 0.66 | 0.688563 |
Target: 5'- uGAGGAUUCagcuuagguGGCCUGCAGgCUUGCUGa -3' miRNA: 3'- cCUCCUGGG---------UCGGACGUCaGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 117830 | 0.66 | 0.687564 |
Target: 5'- aGGGGGAUUaggGGCCgccgGCAGggacguuUCCCAUUGg -3' miRNA: 3'- -CCUCCUGGg--UCGGa---CGUC-------AGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 120386 | 0.67 | 0.678551 |
Target: 5'- -cAGGGCCCA-CCagGCGGaugcuagcguuuUCCCACUGg -3' miRNA: 3'- ccUCCUGGGUcGGa-CGUC------------AGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 120372 | 0.67 | 0.667495 |
Target: 5'- aGAGGGCCCGGuCCUgguacaggacgggGUcaauGGUCCCGgUGg -3' miRNA: 3'- cCUCCUGGGUC-GGA-------------CG----UCAGGGUgAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 30830 | 0.67 | 0.638212 |
Target: 5'- aGGAGGcacaGCgCGGCCUGCGuGUCCgAUa- -3' miRNA: 3'- -CCUCC----UGgGUCGGACGU-CAGGgUGac -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 101 | 0.68 | 0.617983 |
Target: 5'- aGGGGACaguaGGCCUGCuugCUCGCUGg -3' miRNA: 3'- cCUCCUGgg--UCGGACGucaGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 132900 | 0.68 | 0.617983 |
Target: 5'- aGGGGACaguaGGCCUGCuugCUCGCUGg -3' miRNA: 3'- cCUCCUGgg--UCGGACGucaGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 132836 | 0.68 | 0.617983 |
Target: 5'- aGGGGACaguaGGCCUGCuugCUCGCUGg -3' miRNA: 3'- cCUCCUGgg--UCGGACGucaGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 165 | 0.68 | 0.617983 |
Target: 5'- aGGGGACaguaGGCCUGCuugCUCGCUGg -3' miRNA: 3'- cCUCCUGgg--UCGGACGucaGGGUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 96759 | 0.68 | 0.597796 |
Target: 5'- uGGAGGACCCAGUgU-CAGUCUguUUa -3' miRNA: 3'- -CCUCCUGGGUCGgAcGUCAGGguGAc -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 9049 | 0.68 | 0.567715 |
Target: 5'- aGGGGGAgcuuUCCGGCCacagguUGCGGUCCaCGCc- -3' miRNA: 3'- -CCUCCU----GGGUCGG------ACGUCAGG-GUGac -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 90584 | 0.69 | 0.538032 |
Target: 5'- uGGGGGugUguGCCUGCGGaaaCCUuCUGa -3' miRNA: 3'- -CCUCCugGguCGGACGUCa--GGGuGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 12404 | 0.76 | 0.215972 |
Target: 5'- cGGAGGACCCcaAGUCgGCGGUCUgcgCGCUGa -3' miRNA: 3'- -CCUCCUGGG--UCGGaCGUCAGG---GUGAC- -5' |
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13152 | 3' | -59.6 | NC_003401.1 | + | 116889 | 1.1 | 0.000941 |
Target: 5'- gGGAGGACCCAGCCUGCAGUCCCACUGa -3' miRNA: 3'- -CCUCCUGGGUCGGACGUCAGGGUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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