miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13154 5' -57.3 NC_003401.1 + 88366 0.66 0.802558
Target:  5'- gUGCgGGcauucGGCCgGAACAGGCccuguuGCCGc -3'
miRNA:   3'- -ACGaCCaa---CCGGgUUUGUCCGu-----CGGU- -5'
13154 5' -57.3 NC_003401.1 + 128508 0.66 0.78405
Target:  5'- gGUaGGUUGGCgCAu-CAGGUcugGGCCAu -3'
miRNA:   3'- aCGaCCAACCGgGUuuGUCCG---UCGGU- -5'
13154 5' -57.3 NC_003401.1 + 11088 0.66 0.764973
Target:  5'- cGCgc--UGGCCCAGuguuuCgAGGCGGCCGg -3'
miRNA:   3'- aCGaccaACCGGGUUu----G-UCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 132521 0.67 0.755245
Target:  5'- cGCgGGgcGGCCgGGGgcGGCGGCCGc -3'
miRNA:   3'- aCGaCCaaCCGGgUUUguCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 116268 0.67 0.755245
Target:  5'- gGCUccGGggUGGCuCCGggUggGGGCGGCCu -3'
miRNA:   3'- aCGA--CCa-ACCG-GGUuuG--UCCGUCGGu -5'
13154 5' -57.3 NC_003401.1 + 81306 0.67 0.745404
Target:  5'- -aUUGGaUGGCCCcu---GGCAGCCGa -3'
miRNA:   3'- acGACCaACCGGGuuuguCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 232 0.67 0.735459
Target:  5'- aGCaaGcaGGCCagcgagCAGGCAGGCAGCCGu -3'
miRNA:   3'- aCGacCaaCCGG------GUUUGUCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 132967 0.67 0.735459
Target:  5'- aGCaaGcaGGCCagcgagCAGGCAGGCAGCCGu -3'
miRNA:   3'- aCGacCaaCCGG------GUUUGUCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 19280 0.67 0.715299
Target:  5'- cGCUGGUcguuGUCCAugauCAGGCGGCa- -3'
miRNA:   3'- aCGACCAac--CGGGUuu--GUCCGUCGgu -5'
13154 5' -57.3 NC_003401.1 + 107399 0.69 0.632459
Target:  5'- --aUGGUUGGaCCGAGCGgGGCGGuCCAc -3'
miRNA:   3'- acgACCAACCgGGUUUGU-CCGUC-GGU- -5'
13154 5' -57.3 NC_003401.1 + 105196 0.7 0.539348
Target:  5'- -aCUGGUcaccgccaugUGGCCCAccCuGGCGGCCGc -3'
miRNA:   3'- acGACCA----------ACCGGGUuuGuCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 76649 0.7 0.529238
Target:  5'- cUGCUauaaGGUUGGCCCGGG-GGGCgAGCUg -3'
miRNA:   3'- -ACGA----CCAACCGGGUUUgUCCG-UCGGu -5'
13154 5' -57.3 NC_003401.1 + 7016 0.71 0.518199
Target:  5'- cGCUGGUcGG-CCGAACAGGCcguucacguggcgGGUCAa -3'
miRNA:   3'- aCGACCAaCCgGGUUUGUCCG-------------UCGGU- -5'
13154 5' -57.3 NC_003401.1 + 10810 0.72 0.432828
Target:  5'- gUGgUGGUccgUGGCuCCGAGgGGGUGGCCGg -3'
miRNA:   3'- -ACgACCA---ACCG-GGUUUgUCCGUCGGU- -5'
13154 5' -57.3 NC_003401.1 + 117626 1.08 0.001539
Target:  5'- cUGCUGGUUGGCCCAAACAGGCAGCCAa -3'
miRNA:   3'- -ACGACCAACCGGGUUUGUCCGUCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.