Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13155 | 3' | -55.1 | NC_003401.1 | + | 13156 | 0.67 | 0.868289 |
Target: 5'- uGGCGUcgCCCAcgaacUUGGCCGacaCC-GGCCg -3' miRNA: 3'- -CUGCAaaGGGU-----AACCGGCc--GGuUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 17771 | 0.69 | 0.790365 |
Target: 5'- uGCGUauuUUCCCAcggccaacucggUGGCCuGCCuAAGCCu -3' miRNA: 3'- cUGCA---AAGGGUa-----------ACCGGcCGG-UUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 18416 | 0.67 | 0.875736 |
Target: 5'- --gGUUUCCCAggggUGGUcuCGGCgGAGUg -3' miRNA: 3'- cugCAAAGGGUa---ACCG--GCCGgUUCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 20570 | 0.68 | 0.836369 |
Target: 5'- aACGUUcuccCCCAgugGGCCGGCaaccgcGCCu -3' miRNA: 3'- cUGCAAa---GGGUaa-CCGGCCGguu---CGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 23990 | 0.7 | 0.734418 |
Target: 5'- aACGcg-CCCAUUGGCUGccGCCAgcguccaauGGCCg -3' miRNA: 3'- cUGCaaaGGGUAACCGGC--CGGU---------UCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 31658 | 0.67 | 0.868289 |
Target: 5'- -uCGUgUCCUcUUGGCgCGGCUcuGCCu -3' miRNA: 3'- cuGCAaAGGGuAACCG-GCCGGuuCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 32190 | 0.66 | 0.889949 |
Target: 5'- uGAUGUgUUCCCcgUGGUagauacgcaCGGCUuaauGAGCCc -3' miRNA: 3'- -CUGCA-AAGGGuaACCG---------GCCGG----UUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 39138 | 0.67 | 0.852743 |
Target: 5'- aGACGUUUUCaagaaucucauUAUUGG-UGGCCAGGCa -3' miRNA: 3'- -CUGCAAAGG-----------GUAACCgGCCGGUUCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 43309 | 0.68 | 0.82789 |
Target: 5'- cGGCG-UUCCCGUgaGGCgGGCCGcGUa -3' miRNA: 3'- -CUGCaAAGGGUAa-CCGgCCGGUuCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 44016 | 0.66 | 0.889949 |
Target: 5'- gGACGUggacCCCGUUgGGUCGaGCUcAGCUa -3' miRNA: 3'- -CUGCAaa--GGGUAA-CCGGC-CGGuUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 56184 | 0.67 | 0.875736 |
Target: 5'- uGCGUgggCCAUccUGGCCauauucaaGGCCAAGCg -3' miRNA: 3'- cUGCAaagGGUA--ACCGG--------CCGGUUCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 69534 | 0.69 | 0.763861 |
Target: 5'- aACGUc-CCCGUcagGGuCCGGCCAgaguccGGCCg -3' miRNA: 3'- cUGCAaaGGGUAa--CC-GGCCGGU------UCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 80168 | 0.68 | 0.819227 |
Target: 5'- aGGCGcg-CCU--UGGCCuGGCCcAGCCu -3' miRNA: 3'- -CUGCaaaGGGuaACCGG-CCGGuUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 91619 | 0.66 | 0.889949 |
Target: 5'- cGACGUUcaaCCCGUUGuuuuaaacGCCGcGCCAugGGCa -3' miRNA: 3'- -CUGCAAa--GGGUAAC--------CGGC-CGGU--UCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 96726 | 0.68 | 0.836369 |
Target: 5'- --aGUUUCU---UGcGCCGGUCGGGCCg -3' miRNA: 3'- cugCAAAGGguaAC-CGGCCGGUUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 102471 | 0.66 | 0.896705 |
Target: 5'- cGGCGUcUCCCAguauUUGGUCGa--GAGCCu -3' miRNA: 3'- -CUGCAaAGGGU----AACCGGCcggUUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 105787 | 0.66 | 0.903223 |
Target: 5'- cGGCGUUggaCCCGcgGGCCaaagguGGUCAGGUg -3' miRNA: 3'- -CUGCAAa--GGGUaaCCGG------CCGGUUCGg -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 107908 | 0.67 | 0.852743 |
Target: 5'- gGGCGUUUugUCCg--GGuCCGGCUcGGCCg -3' miRNA: 3'- -CUGCAAA--GGGuaaCC-GGCCGGuUCGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 117644 | 0.66 | 0.919607 |
Target: 5'- uGACGg--CU---UGGCCGGCCAAugggaaacgucccuGCCg -3' miRNA: 3'- -CUGCaaaGGguaACCGGCCGGUU--------------CGG- -5' |
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13155 | 3' | -55.1 | NC_003401.1 | + | 117710 | 0.66 | 0.915531 |
Target: 5'- -uCGgUUgCgAUUGGCCGGCCGuucuGUCa -3' miRNA: 3'- cuGCaAAgGgUAACCGGCCGGUu---CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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