miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13155 5' -58.3 NC_003401.1 + 8907 0.66 0.804152
Target:  5'- --cGCCCuGUGGCGGCgAccGGcugacgCGCCg -3'
miRNA:   3'- gauUGGG-CGCCGCCGgUaaCCa-----GCGG- -5'
13155 5' -58.3 NC_003401.1 + 12500 0.67 0.749071
Target:  5'- -aGACCCGCguuucGGUGGUgGgcuggcgGGUCGCg -3'
miRNA:   3'- gaUUGGGCG-----CCGCCGgUaa-----CCAGCGg -5'
13155 5' -58.3 NC_003401.1 + 13876 0.67 0.767926
Target:  5'- -gGGCCUG-GGCGauGgCGUUGGUgCGCCg -3'
miRNA:   3'- gaUUGGGCgCCGC--CgGUAACCA-GCGG- -5'
13155 5' -58.3 NC_003401.1 + 14891 0.66 0.804152
Target:  5'- ---cCCCGCcuGGCGGCCAga-GaUGCCa -3'
miRNA:   3'- gauuGGGCG--CCGCCGGUaacCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 16836 0.66 0.811123
Target:  5'- --cGCgUGCGGCGGCCGcUUGcacaacagccgCGCCg -3'
miRNA:   3'- gauUGgGCGCCGCCGGU-AACca---------GCGG- -5'
13155 5' -58.3 NC_003401.1 + 17387 0.75 0.302089
Target:  5'- uUAACCagcaugGUGGCGGucuCCGUUGGUCGCUc -3'
miRNA:   3'- gAUUGGg-----CGCCGCC---GGUAACCAGCGG- -5'
13155 5' -58.3 NC_003401.1 + 18034 0.68 0.690384
Target:  5'- --cACCCacacCGGCGGCCGcguaUUGGgggucuaCGCCg -3'
miRNA:   3'- gauUGGGc---GCCGCCGGU----AACCa------GCGG- -5'
13155 5' -58.3 NC_003401.1 + 18446 0.67 0.767926
Target:  5'- -gGGCgCgGCGGCGGCCAcaagGGU-GUCu -3'
miRNA:   3'- gaUUG-GgCGCCGCCGGUaa--CCAgCGG- -5'
13155 5' -58.3 NC_003401.1 + 18707 0.68 0.68439
Target:  5'- ----aCCGUGGCGuGCCGUUguccacuagacucgaGGUCuGCCa -3'
miRNA:   3'- gauugGGCGCCGC-CGGUAA---------------CCAG-CGG- -5'
13155 5' -58.3 NC_003401.1 + 20275 0.67 0.739488
Target:  5'- --cGCCCGgGgacgcggacgccGCGGCCAUUGGcucCGCg -3'
miRNA:   3'- gauUGGGCgC------------CGCCGGUAACCa--GCGg -5'
13155 5' -58.3 NC_003401.1 + 20630 0.66 0.820541
Target:  5'- --uACCUGUcguguugGGCGGCCAgcccuacgcUGG-CGCCu -3'
miRNA:   3'- gauUGGGCG-------CCGCCGGUa--------ACCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 23637 0.77 0.239093
Target:  5'- -gGGCgCCGCGaGCGGCCGgcaggUGG-CGCCg -3'
miRNA:   3'- gaUUG-GGCGC-CGCCGGUa----ACCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 23719 0.68 0.680386
Target:  5'- -aAACCCGUGcucuGCGGCCAcuaucuUCGCCa -3'
miRNA:   3'- gaUUGGGCGC----CGCCGGUaacc--AGCGG- -5'
13155 5' -58.3 NC_003401.1 + 23813 0.76 0.275464
Target:  5'- -aAACCgGC-GCGGCCAUUGGaCGCUg -3'
miRNA:   3'- gaUUGGgCGcCGCCGGUAACCaGCGG- -5'
13155 5' -58.3 NC_003401.1 + 28259 0.68 0.680386
Target:  5'- --uACgUGCGGUGGCCc-UGGUUGCg -3'
miRNA:   3'- gauUGgGCGCCGCCGGuaACCAGCGg -5'
13155 5' -58.3 NC_003401.1 + 31023 0.66 0.804152
Target:  5'- -cGGCCCGUauuguGGCaGCCAUUGGUUu-- -3'
miRNA:   3'- gaUUGGGCG-----CCGcCGGUAACCAGcgg -5'
13155 5' -58.3 NC_003401.1 + 37062 0.66 0.795303
Target:  5'- ----aCCGCaGCGGCC-UUGGcuUCGCg -3'
miRNA:   3'- gauugGGCGcCGCCGGuAACC--AGCGg -5'
13155 5' -58.3 NC_003401.1 + 41026 0.67 0.758553
Target:  5'- uUGACagaGCGGCGGCCG-UGGcucacgUGCUg -3'
miRNA:   3'- gAUUGgg-CGCCGCCGGUaACCa-----GCGG- -5'
13155 5' -58.3 NC_003401.1 + 42130 0.69 0.648175
Target:  5'- -cGAUCCccugGUGGCGGCCAcgcuccacccgcUGGUCGCa -3'
miRNA:   3'- gaUUGGG----CGCCGCCGGUa-----------ACCAGCGg -5'
13155 5' -58.3 NC_003401.1 + 51008 0.67 0.758553
Target:  5'- aUAACuuGCGcGUGGUCAcggacggUGGUUGCg -3'
miRNA:   3'- gAUUGggCGC-CGCCGGUa------ACCAGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.