miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13156 5' -50.4 NC_003401.1 + 112206 0.69 0.970936
Target:  5'- uGGCGGCGcGUUAgggCAGAaaaaaacuGCGUGUCugaaACUa -3'
miRNA:   3'- -CCGCCGC-CAGUa--GUCU--------UGUAUAG----UGG- -5'
13156 5' -50.4 NC_003401.1 + 118205 0.69 0.970637
Target:  5'- uGGUGcGCaaaacgucgcccgGGUCAUCcGAgggucacugaaACAUAUCACCa -3'
miRNA:   3'- -CCGC-CG-------------CCAGUAGuCU-----------UGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 117929 0.69 0.961014
Target:  5'- gGGCGGCGGg-GUCGcGGCGagGUCACg -3'
miRNA:   3'- -CCGCCGCCagUAGUcUUGUa-UAGUGg -5'
13156 5' -50.4 NC_003401.1 + 103286 0.69 0.961014
Target:  5'- cGGCGGUGGcC-UCGG-ACGgcgGUCGCUc -3'
miRNA:   3'- -CCGCCGCCaGuAGUCuUGUa--UAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 26981 0.69 0.957241
Target:  5'- gGGCGGCGGagGgccCuGAACAgc-CGCCa -3'
miRNA:   3'- -CCGCCGCCagUa--GuCUUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 17377 0.69 0.957241
Target:  5'- uGGUGGCGGUCuccGUUGGucGCuccUCGCCg -3'
miRNA:   3'- -CCGCCGCCAG---UAGUCu-UGuauAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 36314 0.7 0.948964
Target:  5'- aGGCGGCGGgcccgUAUCAGAGagaAUAcuUCGaauCCa -3'
miRNA:   3'- -CCGCCGCCa----GUAGUCUUg--UAU--AGU---GG- -5'
13156 5' -50.4 NC_003401.1 + 8512 0.7 0.934668
Target:  5'- cGCGGCGGUCuugguGUCggGGAACAgcgCGCg -3'
miRNA:   3'- cCGCCGCCAG-----UAG--UCUUGUauaGUGg -5'
13156 5' -50.4 NC_003401.1 + 128395 0.7 0.934152
Target:  5'- cGCcGCGGUgAUgcucccguuacaaCGGAACAUAUUACCg -3'
miRNA:   3'- cCGcCGCCAgUA-------------GUCUUGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 43612 0.72 0.899152
Target:  5'- cGCGGUGGaUUuuauUCAG-GCAUAUCACUa -3'
miRNA:   3'- cCGCCGCC-AGu---AGUCuUGUAUAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 70729 0.72 0.892345
Target:  5'- cGCGGaCGGUCuuUUAGAACAcg-CGCCc -3'
miRNA:   3'- cCGCC-GCCAGu-AGUCUUGUauaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 93689 0.72 0.870467
Target:  5'- uGGCGGCGGUUAcuauugaCAGGccaaACAUAccuugguccgcUCACCg -3'
miRNA:   3'- -CCGCCGCCAGUa------GUCU----UGUAU-----------AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 69225 0.73 0.846518
Target:  5'- aGCGGU-GUCA-CAGAGCAU-UCACCa -3'
miRNA:   3'- cCGCCGcCAGUaGUCUUGUAuAGUGG- -5'
13156 5' -50.4 NC_003401.1 + 9119 0.73 0.846518
Target:  5'- aGGCGGUcgauaaugggGGUCAUCAuGACGUGUCuCUu -3'
miRNA:   3'- -CCGCCG----------CCAGUAGUcUUGUAUAGuGG- -5'
13156 5' -50.4 NC_003401.1 + 40328 0.74 0.783699
Target:  5'- cGGUGGCGGaCGggCAGGACucccUCGCCa -3'
miRNA:   3'- -CCGCCGCCaGUa-GUCUUGuau-AGUGG- -5'
13156 5' -50.4 NC_003401.1 + 18487 0.75 0.754387
Target:  5'- cGCGGCGcGUCGUCggcGGAGCuuaAUcgCACCa -3'
miRNA:   3'- cCGCCGC-CAGUAG---UCUUG---UAuaGUGG- -5'
13156 5' -50.4 NC_003401.1 + 13682 0.75 0.734246
Target:  5'- uGUGGCGGUCGUCcuGAuCGUGUUugCg -3'
miRNA:   3'- cCGCCGCCAGUAGu-CUuGUAUAGugG- -5'
13156 5' -50.4 NC_003401.1 + 118381 1.15 0.00434
Target:  5'- aGGCGGCGGUCAUCAGAACAUAUCACCc -3'
miRNA:   3'- -CCGCCGCCAGUAGUCUUGUAUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.