miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13157 3' -54.1 NC_003401.1 + 127467 0.66 0.95694
Target:  5'- cCCGUgaGAUGUCUgGCGuGGCGgUCa-- -3'
miRNA:   3'- -GGCAg-CUACAGAaCGC-CCGUgAGagg -5'
13157 3' -54.1 NC_003401.1 + 122431 0.66 0.953036
Target:  5'- gCCGUgCGGUG-CUcgcUGCGguuaacGGCGCUCUgCg -3'
miRNA:   3'- -GGCA-GCUACaGA---ACGC------CCGUGAGAgG- -5'
13157 3' -54.1 NC_003401.1 + 18349 0.66 0.944529
Target:  5'- gCCG-CGAgaccucGUCgcGUcaccagacaccgGGGCGCUCUCCa -3'
miRNA:   3'- -GGCaGCUa-----CAGaaCG------------CCCGUGAGAGG- -5'
13157 3' -54.1 NC_003401.1 + 82361 0.67 0.919078
Target:  5'- gCUGUggcaCGAgUGUCUgugGCGGGCGUUgUCCg -3'
miRNA:   3'- -GGCA----GCU-ACAGAa--CGCCCGUGAgAGG- -5'
13157 3' -54.1 NC_003401.1 + 100192 0.68 0.913264
Target:  5'- gUCGUCGAgGUCguuagUGUccgucacgGGGgACUCUCUa -3'
miRNA:   3'- -GGCAGCUaCAGa----ACG--------CCCgUGAGAGG- -5'
13157 3' -54.1 NC_003401.1 + 98729 0.68 0.88763
Target:  5'- gCgGUCuGuAUGUCgguuaGCgGGGCGCUCUCUg -3'
miRNA:   3'- -GgCAG-C-UACAGaa---CG-CCCGUGAGAGG- -5'
13157 3' -54.1 NC_003401.1 + 15192 0.68 0.878502
Target:  5'- gCGUCGccGUCgcGCGuGGCGCacggaaaucccgccUCUCCa -3'
miRNA:   3'- gGCAGCuaCAGaaCGC-CCGUG--------------AGAGG- -5'
13157 3' -54.1 NC_003401.1 + 31961 0.69 0.858358
Target:  5'- aCCGUCGGUauaCUgcuaaGUGGGCGCgagUUCCa -3'
miRNA:   3'- -GGCAGCUAca-GAa----CGCCCGUGa--GAGG- -5'
13157 3' -54.1 NC_003401.1 + 113887 0.72 0.713207
Target:  5'- gCGUCGGUGUUaccguuguuaUUGCGGGCAaaacaggCUCg -3'
miRNA:   3'- gGCAGCUACAG----------AACGCCCGUga-----GAGg -5'
13157 3' -54.1 NC_003401.1 + 118545 0.8 0.319929
Target:  5'- aCCGggGAUGUCUUGUGaGCACUUUCCc -3'
miRNA:   3'- -GGCagCUACAGAACGCcCGUGAGAGG- -5'
13157 3' -54.1 NC_003401.1 + 118747 1.14 0.002173
Target:  5'- cCCGUCGAUGUCUUGCGGGCACUCUCCu -3'
miRNA:   3'- -GGCAGCUACAGAACGCCCGUGAGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.