miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13157 5' -51.3 NC_003401.1 + 84048 0.66 0.990416
Target:  5'- uGGGcAAGgggGCggGCAGcGGCAUUCCCg -3'
miRNA:   3'- cCCCuUUCa--CGagUGUU-CUGUAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 72999 0.66 0.990416
Target:  5'- aGGGGuuuGUagUCACAggAGGCGUgCCCg -3'
miRNA:   3'- -CCCCuuuCAcgAGUGU--UCUGUAgGGG- -5'
13157 5' -51.3 NC_003401.1 + 126316 0.66 0.989621
Target:  5'- uGGGAcucggcaagagacacAGGUGCUCAaAGGuCgAUCCCUg -3'
miRNA:   3'- cCCCU---------------UUCACGAGUgUUCuG-UAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 47974 0.66 0.987567
Target:  5'- cGGGucGGUGUUUugAAauaccCGUCCCCa -3'
miRNA:   3'- cCCCuuUCACGAGugUUcu---GUAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 95343 0.66 0.987567
Target:  5'- gGGGGAcauuuccucaugAAGUGCUUugAGGGuuuUGUCUUCg -3'
miRNA:   3'- -CCCCU------------UUCACGAGugUUCU---GUAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 118222 0.66 0.985916
Target:  5'- gGGGGAAuucgggaccauGGUGC--GCAAaACGUCgCCCg -3'
miRNA:   3'- -CCCCUU-----------UCACGagUGUUcUGUAG-GGG- -5'
13157 5' -51.3 NC_003401.1 + 44171 0.67 0.982118
Target:  5'- aGGGGguGGUGCcacCugAGGuACAggCCCUg -3'
miRNA:   3'- -CCCCuuUCACGa--GugUUC-UGUa-GGGG- -5'
13157 5' -51.3 NC_003401.1 + 43587 0.67 0.982118
Target:  5'- uGGGGAAccuGUGCUCu--AGGgAUUCCg -3'
miRNA:   3'- -CCCCUUu--CACGAGuguUCUgUAGGGg -5'
13157 5' -51.3 NC_003401.1 + 115244 0.67 0.982118
Target:  5'- cGGGGGAcGUGCacccCACcggGGGACuugcaCCCCa -3'
miRNA:   3'- -CCCCUUuCACGa---GUG---UUCUGua---GGGG- -5'
13157 5' -51.3 NC_003401.1 + 57437 0.67 0.979952
Target:  5'- gGGGGGAAGgggGUUCcCuccgGAGugGcCCCCg -3'
miRNA:   3'- -CCCCUUUCa--CGAGuG----UUCugUaGGGG- -5'
13157 5' -51.3 NC_003401.1 + 56114 0.67 0.975044
Target:  5'- -uGGAucGUGCUCAU-AGGC-UCCCa -3'
miRNA:   3'- ccCCUuuCACGAGUGuUCUGuAGGGg -5'
13157 5' -51.3 NC_003401.1 + 15375 0.67 0.975044
Target:  5'- cGGGGGAGGgggGUUCAUGAGGuCggUCUCa -3'
miRNA:   3'- -CCCCUUUCa--CGAGUGUUCU-GuaGGGG- -5'
13157 5' -51.3 NC_003401.1 + 8933 0.68 0.9627
Target:  5'- uGGGAAcGGUuaUCACGGGACGcaggcgCCCUg -3'
miRNA:   3'- cCCCUU-UCAcgAGUGUUCUGUa-----GGGG- -5'
13157 5' -51.3 NC_003401.1 + 90400 0.68 0.956348
Target:  5'- uGGGGAuaauuuaugaggAAGUGCgagguuuUCACGGGGCAUauacguacacgugcaCCCUa -3'
miRNA:   3'- -CCCCU------------UUCACG-------AGUGUUCUGUA---------------GGGG- -5'
13157 5' -51.3 NC_003401.1 + 9121 0.69 0.937118
Target:  5'- uGGGGAAGG-GCUgC-CAGGACuuaagCUCCg -3'
miRNA:   3'- -CCCCUUUCaCGA-GuGUUCUGua---GGGG- -5'
13157 5' -51.3 NC_003401.1 + 125133 0.7 0.920924
Target:  5'- uGGGu-AGUGCUgCGCGA-ACAUCCUCg -3'
miRNA:   3'- cCCCuuUCACGA-GUGUUcUGUAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 21046 0.7 0.908848
Target:  5'- cGGcGGAccucuGGUacaGCUgGCAGGACAgcUCCCCc -3'
miRNA:   3'- -CC-CCUu----UCA---CGAgUGUUCUGU--AGGGG- -5'
13157 5' -51.3 NC_003401.1 + 19968 0.71 0.86974
Target:  5'- aGGGGGguguuugagccaccuGuGUGUUCGCGAGGCGcgcgaCCCCg -3'
miRNA:   3'- -CCCCU---------------UuCACGAGUGUUCUGUa----GGGG- -5'
13157 5' -51.3 NC_003401.1 + 107979 0.72 0.816381
Target:  5'- uGGGuaaucGUGCUCA--AGGCGUCCCUg -3'
miRNA:   3'- cCCCuuu--CACGAGUguUCUGUAGGGG- -5'
13157 5' -51.3 NC_003401.1 + 20746 0.73 0.769482
Target:  5'- cGGGGGu-GUGCUCAaacGGcCAUCUCCa -3'
miRNA:   3'- -CCCCUuuCACGAGUgu-UCuGUAGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.