miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13158 3' -63.8 NC_003401.1 + 118024 0.65 0.5623
Target:  5'- gCGCGuACCCau-CGGCCGCucuuuggCGCCGGGg -3'
miRNA:   3'- -GCGU-UGGGagcGCCGGCG-------GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 125266 0.66 0.553669
Target:  5'- aCGCAACCCgUCugccaacuCGGCCGUgGCCGc-- -3'
miRNA:   3'- -GCGUUGGG-AGc-------GCCGGCGgCGGCuca -5'
13158 3' -63.8 NC_003401.1 + 118189 0.66 0.544126
Target:  5'- gGCGACCC-CgGCGGCgGCaccgcgggCGCUGGGg -3'
miRNA:   3'- gCGUUGGGaG-CGCCGgCG--------GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 42302 0.66 0.542223
Target:  5'- uGCGACCagcggguggagCGUGGCCGCCaCCaGGGg -3'
miRNA:   3'- gCGUUGGga---------GCGCCGGCGGcGG-CUCa -5'
13158 3' -63.8 NC_003401.1 + 105634 0.66 0.534637
Target:  5'- --uGGCCCgCGCGGUCcaaCGCCGAGg -3'
miRNA:   3'- gcgUUGGGaGCGCCGGcg-GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 66719 0.66 0.534637
Target:  5'- gGCGGCgCUCGCGcaccuuugacaGCCGCaCGCC-AGUu -3'
miRNA:   3'- gCGUUGgGAGCGC-----------CGGCG-GCGGcUCA- -5'
13158 3' -63.8 NC_003401.1 + 132443 0.66 0.534637
Target:  5'- gGCcGCCCcCGgGuGCCGCucCGCCGGGc -3'
miRNA:   3'- gCGuUGGGaGCgC-CGGCG--GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 117760 0.66 0.528971
Target:  5'- gGCGGCCauggucgcCGCGGCCGuCUgucuuuugcuucgcuGCCGAGUu -3'
miRNA:   3'- gCGUUGGga------GCGCCGGC-GG---------------CGGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 17815 0.66 0.525207
Target:  5'- gGguGCCCUccgagCGCGcGCCGCCguucucGCCGAa- -3'
miRNA:   3'- gCguUGGGA-----GCGC-CGGCGG------CGGCUca -5'
13158 3' -63.8 NC_003401.1 + 62478 0.66 0.525207
Target:  5'- uGCAcCCCUCcCGGCCGCUcuggcaaCCGGGc -3'
miRNA:   3'- gCGUuGGGAGcGCCGGCGGc------GGCUCa -5'
13158 3' -63.8 NC_003401.1 + 48434 0.66 0.51584
Target:  5'- aGCGGCaagaucCGCGGCCGuuGCCGcuAGa -3'
miRNA:   3'- gCGUUGgga---GCGCCGGCggCGGC--UCa -5'
13158 3' -63.8 NC_003401.1 + 28358 0.67 0.497316
Target:  5'- gGCGuAUCCaUCGUGGauaCCGCCGCCuGAGc -3'
miRNA:   3'- gCGU-UGGG-AGCGCC---GGCGGCGG-CUCa -5'
13158 3' -63.8 NC_003401.1 + 132629 0.67 0.479097
Target:  5'- aCGCcGCCC-CGaaaGGUggucuccgCGCCGCCGGGa -3'
miRNA:   3'- -GCGuUGGGaGCg--CCG--------GCGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 21603 0.67 0.479097
Target:  5'- uGCAGCUCgcCGUGGUCGCCGCgGc-- -3'
miRNA:   3'- gCGUUGGGa-GCGCCGGCGGCGgCuca -5'
13158 3' -63.8 NC_003401.1 + 18203 0.67 0.479097
Target:  5'- gGCGuagACCCccaauaCGCGGCCGCCGgugUGGGUg -3'
miRNA:   3'- gCGU---UGGGa-----GCGCCGGCGGCg--GCUCA- -5'
13158 3' -63.8 NC_003401.1 + 126610 0.67 0.479097
Target:  5'- aCGCAGUCgUCaucaCGGCCaCCGCCGAGg -3'
miRNA:   3'- -GCGUUGGgAGc---GCCGGcGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 118274 0.67 0.478194
Target:  5'- gGCGGCUUUUGCcgcccggGGUCGCCGgCGGGUc -3'
miRNA:   3'- gCGUUGGGAGCG-------CCGGCGGCgGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 118861 0.67 0.47011
Target:  5'- uCGCcGCCCUCcucgccuCGGUgcaCGCUGCCGAGc -3'
miRNA:   3'- -GCGuUGGGAGc------GCCG---GCGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 14516 0.67 0.47011
Target:  5'- gGCGACgggCUUGCGGUCGCgCGCCGu-- -3'
miRNA:   3'- gCGUUGg--GAGCGCCGGCG-GCGGCuca -5'
13158 3' -63.8 NC_003401.1 + 21796 0.67 0.461211
Target:  5'- cCGC-ACCCgaaggugcCGCGGCCGuCCGCUGcgcGUg -3'
miRNA:   3'- -GCGuUGGGa-------GCGCCGGC-GGCGGCu--CA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.