miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13158 3' -63.8 NC_003401.1 + 14516 0.67 0.47011
Target:  5'- gGCGACgggCUUGCGGUCGCgCGCCGu-- -3'
miRNA:   3'- gCGUUGg--GAGCGCCGGCG-GCGGCuca -5'
13158 3' -63.8 NC_003401.1 + 16671 0.7 0.311505
Target:  5'- gCGCGGCUgUUgugcaaGCGGCCGCCGCaCGcGGUa -3'
miRNA:   3'- -GCGUUGGgAG------CGCCGGCGGCG-GC-UCA- -5'
13158 3' -63.8 NC_003401.1 + 17815 0.66 0.525207
Target:  5'- gGguGCCCUccgagCGCGcGCCGCCguucucGCCGAa- -3'
miRNA:   3'- gCguUGGGA-----GCGC-CGGCGG------CGGCUca -5'
13158 3' -63.8 NC_003401.1 + 18203 0.67 0.479097
Target:  5'- gGCGuagACCCccaauaCGCGGCCGCCGgugUGGGUg -3'
miRNA:   3'- gCGU---UGGGa-----GCGCCGGCGGCg--GCUCA- -5'
13158 3' -63.8 NC_003401.1 + 18289 0.76 0.124003
Target:  5'- ---cACCCUUGUGGCCGCCGCCGc-- -3'
miRNA:   3'- gcguUGGGAGCGCCGGCGGCGGCuca -5'
13158 3' -63.8 NC_003401.1 + 18501 0.71 0.298073
Target:  5'- aCGCGACgaggUCUCGCGGCgCGUCGUCGGc- -3'
miRNA:   3'- -GCGUUG----GGAGCGCCG-GCGGCGGCUca -5'
13158 3' -63.8 NC_003401.1 + 21291 0.68 0.421471
Target:  5'- cCGUAcaccggccccagaucGCCCUCGCGGCgGUCcCCGAa- -3'
miRNA:   3'- -GCGU---------------UGGGAGCGCCGgCGGcGGCUca -5'
13158 3' -63.8 NC_003401.1 + 21603 0.67 0.479097
Target:  5'- uGCAGCUCgcCGUGGUCGCCGCgGc-- -3'
miRNA:   3'- gCGUUGGGa-GCGCCGGCGGCGgCuca -5'
13158 3' -63.8 NC_003401.1 + 21796 0.67 0.461211
Target:  5'- cCGC-ACCCgaaggugcCGCGGCCGuCCGCUGcgcGUg -3'
miRNA:   3'- -GCGuUGGGa-------GCGCCGGC-GGCGGCu--CA- -5'
13158 3' -63.8 NC_003401.1 + 21835 0.68 0.426537
Target:  5'- gCGUGGCUggaaUCGCGGCCGCaCGacuCCGGGUu -3'
miRNA:   3'- -GCGUUGGg---AGCGCCGGCG-GC---GGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 28358 0.67 0.497316
Target:  5'- gGCGuAUCCaUCGUGGauaCCGCCGCCuGAGc -3'
miRNA:   3'- gCGU-UGGG-AGCGCC---GGCGGCGG-CUCa -5'
13158 3' -63.8 NC_003401.1 + 42302 0.66 0.542223
Target:  5'- uGCGACCagcggguggagCGUGGCCGCCaCCaGGGg -3'
miRNA:   3'- gCGUUGGga---------GCGCCGGCGGcGG-CUCa -5'
13158 3' -63.8 NC_003401.1 + 48434 0.66 0.51584
Target:  5'- aGCGGCaagaucCGCGGCCGuuGCCGcuAGa -3'
miRNA:   3'- gCGUUGgga---GCGCCGGCggCGGC--UCa -5'
13158 3' -63.8 NC_003401.1 + 62478 0.66 0.525207
Target:  5'- uGCAcCCCUCcCGGCCGCUcuggcaaCCGGGc -3'
miRNA:   3'- gCGUuGGGAGcGCCGGCGGc------GGCUCa -5'
13158 3' -63.8 NC_003401.1 + 66719 0.66 0.534637
Target:  5'- gGCGGCgCUCGCGcaccuuugacaGCCGCaCGCC-AGUu -3'
miRNA:   3'- gCGUUGgGAGCGC-----------CGGCG-GCGGcUCA- -5'
13158 3' -63.8 NC_003401.1 + 98677 0.71 0.278775
Target:  5'- aCGCAGCCaUCGUcuccagcccgGGauuCGCCGCCGAGUu -3'
miRNA:   3'- -GCGUUGGgAGCG----------CCg--GCGGCGGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 105634 0.66 0.534637
Target:  5'- --uGGCCCgCGCGGUCcaaCGCCGAGg -3'
miRNA:   3'- gcgUUGGGaGCGCCGGcg-GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 107734 0.69 0.354526
Target:  5'- gGCAACgCUCGgGGCgGCCgaGCCGGa- -3'
miRNA:   3'- gCGUUGgGAGCgCCGgCGG--CGGCUca -5'
13158 3' -63.8 NC_003401.1 + 117760 0.66 0.528971
Target:  5'- gGCGGCCauggucgcCGCGGCCGuCUgucuuuugcuucgcuGCCGAGUu -3'
miRNA:   3'- gCGUUGGga------GCGCCGGC-GG---------------CGGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 118024 0.65 0.5623
Target:  5'- gCGCGuACCCau-CGGCCGCucuuuggCGCCGGGg -3'
miRNA:   3'- -GCGU-UGGGagcGCCGGCG-------GCGGCUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.