miRNA display CGI


Results 1 - 20 of 43 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13158 3' -63.8 NC_003401.1 + 132443 0.66 0.534637
Target:  5'- gGCcGCCCcCGgGuGCCGCucCGCCGGGc -3'
miRNA:   3'- gCGuUGGGaGCgC-CGGCG--GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 118116 0.68 0.443683
Target:  5'- gGCGACCCcggGCGGCaaaaGCCGCCc--- -3'
miRNA:   3'- gCGUUGGGag-CGCCGg---CGGCGGcuca -5'
13158 3' -63.8 NC_003401.1 + 118861 0.67 0.47011
Target:  5'- uCGCcGCCCUCcucgccuCGGUgcaCGCUGCCGAGc -3'
miRNA:   3'- -GCGuUGGGAGc------GCCG---GCGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 21603 0.67 0.479097
Target:  5'- uGCAGCUCgcCGUGGUCGCCGCgGc-- -3'
miRNA:   3'- gCGUUGGGa-GCGCCGGCGGCGgCuca -5'
13158 3' -63.8 NC_003401.1 + 132629 0.67 0.479097
Target:  5'- aCGCcGCCC-CGaaaGGUggucuccgCGCCGCCGGGa -3'
miRNA:   3'- -GCGuUGGGaGCg--CCG--------GCGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 48434 0.66 0.51584
Target:  5'- aGCGGCaagaucCGCGGCCGuuGCCGcuAGa -3'
miRNA:   3'- gCGUUGgga---GCGCCGGCggCGGC--UCa -5'
13158 3' -63.8 NC_003401.1 + 62478 0.66 0.525207
Target:  5'- uGCAcCCCUCcCGGCCGCUcuggcaaCCGGGc -3'
miRNA:   3'- gCGUuGGGAGcGCCGGCGGc------GGCUCa -5'
13158 3' -63.8 NC_003401.1 + 66719 0.66 0.534637
Target:  5'- gGCGGCgCUCGCGcaccuuugacaGCCGCaCGCC-AGUu -3'
miRNA:   3'- gCGUUGgGAGCGC-----------CGGCG-GCGGcUCA- -5'
13158 3' -63.8 NC_003401.1 + 105634 0.66 0.534637
Target:  5'- --uGGCCCgCGCGGUCcaaCGCCGAGg -3'
miRNA:   3'- gcgUUGGGaGCGCCGGcg-GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 21291 0.68 0.421471
Target:  5'- cCGUAcaccggccccagaucGCCCUCGCGGCgGUCcCCGAa- -3'
miRNA:   3'- -GCGU---------------UGGGAGCGCCGgCGGcGGCUca -5'
13158 3' -63.8 NC_003401.1 + 132284 0.68 0.409791
Target:  5'- gCGCGccccccggGCCCgcgCGcCGGgCGCCGCCGGc- -3'
miRNA:   3'- -GCGU--------UGGGa--GC-GCCgGCGGCGGCUca -5'
13158 3' -63.8 NC_003401.1 + 132220 0.68 0.409791
Target:  5'- gGC-GCCCggcCG-GcGCCGCCGCCGGGc -3'
miRNA:   3'- gCGuUGGGa--GCgC-CGGCGGCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 18289 0.76 0.124003
Target:  5'- ---cACCCUUGUGGCCGCCGCCGc-- -3'
miRNA:   3'- gcguUGGGAGCGCCGGCGGCGGCuca -5'
13158 3' -63.8 NC_003401.1 + 132346 0.76 0.133576
Target:  5'- cCGcCGGCCCgggccCGCGGCCGCCGCCc--- -3'
miRNA:   3'- -GC-GUUGGGa----GCGCCGGCGGCGGcuca -5'
13158 3' -63.8 NC_003401.1 + 98677 0.71 0.278775
Target:  5'- aCGCAGCCaUCGUcuccagcccgGGauuCGCCGCCGAGUu -3'
miRNA:   3'- -GCGUUGGgAGCG----------CCg--GCGGCGGCUCA- -5'
13158 3' -63.8 NC_003401.1 + 119735 0.71 0.285095
Target:  5'- gGCAACCgaCUCgGCGGCgGCCG-CGAGg -3'
miRNA:   3'- gCGUUGG--GAG-CGCCGgCGGCgGCUCa -5'
13158 3' -63.8 NC_003401.1 + 16671 0.7 0.311505
Target:  5'- gCGCGGCUgUUgugcaaGCGGCCGCCGCaCGcGGUa -3'
miRNA:   3'- -GCGUUGGgAG------CGCCGGCGGCG-GC-UCA- -5'
13158 3' -63.8 NC_003401.1 + 132563 0.7 0.311505
Target:  5'- gCGCGGCucccgaugCCggGCGGCCGCCGCCcGGc -3'
miRNA:   3'- -GCGUUG--------GGagCGCCGGCGGCGGcUCa -5'
13158 3' -63.8 NC_003401.1 + 132377 0.7 0.318391
Target:  5'- gGCcGCCC-CGC-GCCGCgCGCCGGGc -3'
miRNA:   3'- gCGuUGGGaGCGcCGGCG-GCGGCUCa -5'
13158 3' -63.8 NC_003401.1 + 107734 0.69 0.354526
Target:  5'- gGCAACgCUCGgGGCgGCCgaGCCGGa- -3'
miRNA:   3'- gCGUUGgGAGCgCCGgCGG--CGGCUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.