miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13158 5' -48.7 NC_003401.1 + 69772 0.66 0.998933
Target:  5'- -gACCgUUGCGGcGGUUUcGGCGAAGGg -3'
miRNA:   3'- ggUGG-AACGCCcUUAAA-CUGCUUCUg -5'
13158 5' -48.7 NC_003401.1 + 126444 0.66 0.998933
Target:  5'- uUCACCUcgGCGGuGGccgUGAUGAcGACu -3'
miRNA:   3'- -GGUGGAa-CGCC-CUuaaACUGCUuCUG- -5'
13158 5' -48.7 NC_003401.1 + 93563 0.66 0.998866
Target:  5'- gCACCUcaucggaguccucgUGCaGGGAAaUUUGACuGggGAa -3'
miRNA:   3'- gGUGGA--------------ACG-CCCUU-AAACUG-CuuCUg -5'
13158 5' -48.7 NC_003401.1 + 11979 0.66 0.998099
Target:  5'- gCCACCUUGCGGuaccucUGACcuuaAAGAUg -3'
miRNA:   3'- -GGUGGAACGCCcuuaa-ACUGc---UUCUG- -5'
13158 5' -48.7 NC_003401.1 + 132683 0.66 0.998099
Target:  5'- gCGCCUcgGCGGGGccc-GGCGcGGGGCg -3'
miRNA:   3'- gGUGGAa-CGCCCUuaaaCUGC-UUCUG- -5'
13158 5' -48.7 NC_003401.1 + 88513 0.66 0.997721
Target:  5'- gCGCC--GUGGGAGgc-GACGggGAg -3'
miRNA:   3'- gGUGGaaCGCCCUUaaaCUGCuuCUg -5'
13158 5' -48.7 NC_003401.1 + 78527 0.67 0.996192
Target:  5'- aCCGCCUggcggagGCGGcGAAccUGGCgGGAGAg -3'
miRNA:   3'- -GGUGGAa------CGCC-CUUaaACUG-CUUCUg -5'
13158 5' -48.7 NC_003401.1 + 14399 0.67 0.995525
Target:  5'- cCCGCCUgccccugGCGuucGGAGgcaGGCGggGAUg -3'
miRNA:   3'- -GGUGGAa------CGC---CCUUaaaCUGCuuCUG- -5'
13158 5' -48.7 NC_003401.1 + 106212 0.67 0.995525
Target:  5'- aCCACCagaaGCGGcGGAgucGACGAccGGGCg -3'
miRNA:   3'- -GGUGGaa--CGCC-CUUaaaCUGCU--UCUG- -5'
13158 5' -48.7 NC_003401.1 + 13463 0.67 0.994767
Target:  5'- aCGCCUgGCGGGAcuccggGAgGAccuGGACa -3'
miRNA:   3'- gGUGGAaCGCCCUuaaa--CUgCU---UCUG- -5'
13158 5' -48.7 NC_003401.1 + 76134 0.68 0.992938
Target:  5'- gCACCUguaUGUGGGAAUUcu-CGAAGcCa -3'
miRNA:   3'- gGUGGA---ACGCCCUUAAacuGCUUCuG- -5'
13158 5' -48.7 NC_003401.1 + 18182 0.68 0.991849
Target:  5'- gCCGCCggUGUGGGugggcagGACGGguccGGACu -3'
miRNA:   3'- -GGUGGa-ACGCCCuuaaa--CUGCU----UCUG- -5'
13158 5' -48.7 NC_003401.1 + 132780 0.68 0.989275
Target:  5'- aCCACCUUuCGGGGcggcGugGggGAg -3'
miRNA:   3'- -GGUGGAAcGCCCUuaaaCugCuuCUg -5'
13158 5' -48.7 NC_003401.1 + 89676 0.7 0.969238
Target:  5'- uCCGCCggaGCGGGAGga-GGCaGGGGCg -3'
miRNA:   3'- -GGUGGaa-CGCCCUUaaaCUGcUUCUG- -5'
13158 5' -48.7 NC_003401.1 + 121454 0.71 0.950505
Target:  5'- cCCGgUgagucggGCGGGGAUUgcggagggGGCGAGGACg -3'
miRNA:   3'- -GGUgGaa-----CGCCCUUAAa-------CUGCUUCUG- -5'
13158 5' -48.7 NC_003401.1 + 100856 0.73 0.91346
Target:  5'- gUCGCCg-GUGGGggUUUGGCGcucGACg -3'
miRNA:   3'- -GGUGGaaCGCCCuuAAACUGCuu-CUG- -5'
13158 5' -48.7 NC_003401.1 + 68063 0.73 0.900491
Target:  5'- gCC-CCUgguggaUGCGGGcugcguagGAUUUGACGAAGAa -3'
miRNA:   3'- -GGuGGA------ACGCCC--------UUAAACUGCUUCUg -5'
13158 5' -48.7 NC_003401.1 + 36911 0.73 0.893617
Target:  5'- gCugCUUGUgcguGGGAAcg-GACGAAGGCg -3'
miRNA:   3'- gGugGAACG----CCCUUaaaCUGCUUCUG- -5'
13158 5' -48.7 NC_003401.1 + 69735 0.74 0.886487
Target:  5'- gCCGCCaUGCGGGAcucuggagugUUGGCGAuaucggccGGACu -3'
miRNA:   3'- -GGUGGaACGCCCUua--------AACUGCU--------UCUG- -5'
13158 5' -48.7 NC_003401.1 + 119866 1.12 0.008403
Target:  5'- aCCACCUUGCGGGAAUUUGACGAAGACc -3'
miRNA:   3'- -GGUGGAACGCCCUUAAACUGCUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.