miRNA display CGI


Results 1 - 20 of 83 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13159 3' -49 NC_003401.1 + 57948 0.66 0.998056
Target:  5'- -cGUAC-AGGAAAcUUCCCACCcGCCu -3'
miRNA:   3'- guCGUGaUUUUUUuAGGGGUGGcCGG- -5'
13159 3' -49 NC_003401.1 + 17208 0.66 0.998056
Target:  5'- aCAGaCACUGGAGGAuguuggCCgCGCCGuGCa -3'
miRNA:   3'- -GUC-GUGAUUUUUUua----GGgGUGGC-CGg -5'
13159 3' -49 NC_003401.1 + 126385 0.66 0.997669
Target:  5'- cCAGCACgau-GAGGUUaCCGgUGGCCu -3'
miRNA:   3'- -GUCGUGauuuUUUUAGgGGUgGCCGG- -5'
13159 3' -49 NC_003401.1 + 101551 0.66 0.997669
Target:  5'- -uGCACgcGGAcgGUCCCCG--GGCCu -3'
miRNA:   3'- guCGUGauUUUuuUAGGGGUggCCGG- -5'
13159 3' -49 NC_003401.1 + 80528 0.66 0.997669
Target:  5'- gCAGCcgucAC-AAAAGAAUCCcaCCugCGGCa -3'
miRNA:   3'- -GUCG----UGaUUUUUUUAGG--GGugGCCGg -5'
13159 3' -49 NC_003401.1 + 132205 0.66 0.997669
Target:  5'- gCGGCcggGCccGGAGGcgCCCgGCCGGCg -3'
miRNA:   3'- -GUCG---UGauUUUUUuaGGGgUGGCCGg -5'
13159 3' -49 NC_003401.1 + 42327 0.66 0.997669
Target:  5'- -uGCACaUGAAGcuGUCCgCGCCGGg- -3'
miRNA:   3'- guCGUG-AUUUUuuUAGGgGUGGCCgg -5'
13159 3' -49 NC_003401.1 + 78063 0.66 0.997584
Target:  5'- aCAGUGCUuucagguGUgCCUGCCGGCg -3'
miRNA:   3'- -GUCGUGAuuuuuu-UAgGGGUGGCCGg -5'
13159 3' -49 NC_003401.1 + 86227 0.66 0.997541
Target:  5'- -uGCGCUuuggccguccugucAGAuGAA-CCCCGCCGGUa -3'
miRNA:   3'- guCGUGA--------------UUUuUUUaGGGGUGGCCGg -5'
13159 3' -49 NC_003401.1 + 94943 0.66 0.997219
Target:  5'- aCGGCaacgaGCUAGAGuguUUgCCAgCGGCCa -3'
miRNA:   3'- -GUCG-----UGAUUUUuuuAGgGGUgGCCGG- -5'
13159 3' -49 NC_003401.1 + 30315 0.66 0.997219
Target:  5'- aCGGguCUucuaccuuGGAAAAUCuCCCACCcaggagcgaGGCCa -3'
miRNA:   3'- -GUCguGAu-------UUUUUUAG-GGGUGG---------CCGG- -5'
13159 3' -49 NC_003401.1 + 110719 0.66 0.996916
Target:  5'- gGGUACcggGGAGgaaggauuguucuacGAGUCCCCGCagagagGGCCa -3'
miRNA:   3'- gUCGUGa--UUUU---------------UUUAGGGGUGg-----CCGG- -5'
13159 3' -49 NC_003401.1 + 132300 0.66 0.996916
Target:  5'- -cGCGCgccggg---CgCCGCCGGCCu -3'
miRNA:   3'- guCGUGauuuuuuuaGgGGUGGCCGG- -5'
13159 3' -49 NC_003401.1 + 102797 0.66 0.996699
Target:  5'- cCAGCGCacAAAAGGaaUCCGCUGGCg -3'
miRNA:   3'- -GUCGUGauUUUUUUagGGGUGGCCGg -5'
13159 3' -49 NC_003401.1 + 49748 0.66 0.996699
Target:  5'- -cGCACUGuguAAGAagCCCAacgauuCUGGCCa -3'
miRNA:   3'- guCGUGAUuu-UUUUagGGGU------GGCCGG- -5'
13159 3' -49 NC_003401.1 + 21201 0.66 0.996699
Target:  5'- cCAGCugUAccAGAGGUCCgccgaCAUgGGCCu -3'
miRNA:   3'- -GUCGugAUu-UUUUUAGGg----GUGgCCGG- -5'
13159 3' -49 NC_003401.1 + 126795 0.66 0.996586
Target:  5'- -cGCACUGuccga---CCCACCGGUUc -3'
miRNA:   3'- guCGUGAUuuuuuuagGGGUGGCCGG- -5'
13159 3' -49 NC_003401.1 + 117487 0.66 0.996528
Target:  5'- cCAGCAgc--GAGAAUUCCCugauugacaggcggACUGGCCa -3'
miRNA:   3'- -GUCGUgauuUUUUUAGGGG--------------UGGCCGG- -5'
13159 3' -49 NC_003401.1 + 14164 0.66 0.99647
Target:  5'- aGGCACcGAugcucccgCCCCuGCCGGCg -3'
miRNA:   3'- gUCGUGaUUuuuuua--GGGG-UGGCCGg -5'
13159 3' -49 NC_003401.1 + 10627 0.66 0.996101
Target:  5'- gAGCGCg----GGAUCgCaaaaACCGGCCa -3'
miRNA:   3'- gUCGUGauuuuUUUAGgGg---UGGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.