miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1316 5' -63.1 NC_001331.1 + 6854 0.66 0.056985
Target:  5'- -cAAGCcGCCCGCaccGUGGCCGAUCcggucaaggGCCg -3'
miRNA:   3'- ccUUCGcCGGGUG---CGCCGGCUGG---------CGG- -5'
1316 5' -63.1 NC_001331.1 + 5821 0.67 0.050168
Target:  5'- uGAAG-GGCgagACG-GGCCGACCGCUg -3'
miRNA:   3'- cCUUCgCCGgg-UGCgCCGGCUGGCGG- -5'
1316 5' -63.1 NC_001331.1 + 6656 0.67 0.047065
Target:  5'- -aGGGCaGCCCAgGgGGCCGGCaGUCc -3'
miRNA:   3'- ccUUCGcCGGGUgCgCCGGCUGgCGG- -5'
1316 5' -63.1 NC_001331.1 + 6252 0.68 0.038836
Target:  5'- cGGAugcgauGCaGGUucaCCACGCGG-CGACgGCCa -3'
miRNA:   3'- -CCUu-----CG-CCG---GGUGCGCCgGCUGgCGG- -5'
1316 5' -63.1 NC_001331.1 + 4094 0.69 0.03607
Target:  5'- cGGAGGCGGCaacagGCGCuGCCGgagcgaugcuggccACCGCg -3'
miRNA:   3'- -CCUUCGCCGgg---UGCGcCGGC--------------UGGCGg -5'
1316 5' -63.1 NC_001331.1 + 305 0.69 0.033069
Target:  5'- -uGGGCGGCaagCCGaugGC-GCCGACCGCCc -3'
miRNA:   3'- ccUUCGCCG---GGUg--CGcCGGCUGGCGG- -5'
1316 5' -63.1 NC_001331.1 + 4305 0.69 0.033069
Target:  5'- -uGAGCgauaGGCCgaagGCGCGGCCGA-CGCCc -3'
miRNA:   3'- ccUUCG----CCGGg---UGCGCCGGCUgGCGG- -5'
1316 5' -63.1 NC_001331.1 + 348 0.71 0.023948
Target:  5'- gGGGcuugGGCGGUCgGCGCcaucGGCUuGCCGCCc -3'
miRNA:   3'- -CCU----UCGCCGGgUGCG----CCGGcUGGCGG- -5'
1316 5' -63.1 NC_001331.1 + 614 0.72 0.019528
Target:  5'- cGGggGUcgaGGUCCACGCGGUacacaccugcacagCGACaaCGCCu -3'
miRNA:   3'- -CCuuCG---CCGGGUGCGCCG--------------GCUG--GCGG- -5'
1316 5' -63.1 NC_001331.1 + 3279 0.72 0.01909
Target:  5'- -cGAGCcaGCCCAUgggGCGGUCGGCCGCg -3'
miRNA:   3'- ccUUCGc-CGGGUG---CGCCGGCUGGCGg -5'
1316 5' -63.1 NC_001331.1 + 4291 0.73 0.013797
Target:  5'- cGgcGCGGCCCGCcccucaugGCGGCaccccuACCGCCg -3'
miRNA:   3'- cCuuCGCCGGGUG--------CGCCGgc----UGGCGG- -5'
1316 5' -63.1 NC_001331.1 + 4030 0.74 0.01088
Target:  5'- gGGAGGCaGGCCgGCGCGGuggccagcaucgcuCCGGCagCGCCu -3'
miRNA:   3'- -CCUUCG-CCGGgUGCGCC--------------GGCUG--GCGG- -5'
1316 5' -63.1 NC_001331.1 + 4268 0.77 0.006109
Target:  5'- aGggGCGGgCCGCGCcGCCGGCCGg- -3'
miRNA:   3'- cCuuCGCCgGGUGCGcCGGCUGGCgg -5'
1316 5' -63.1 NC_001331.1 + 3231 1.12 0.000005
Target:  5'- cGGAAGCGGCCCACGCGGCCGACCGCCc -3'
miRNA:   3'- -CCUUCGCCGGGUGCGCCGGCUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.