miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13160 5' -54.3 NC_003401.1 + 73376 0.68 0.879391
Target:  5'- -aGUCAAAGgCGUacGGAACCGUauGGGc -3'
miRNA:   3'- gaCAGUUUCgGCG--CCUUGGCGguUCC- -5'
13160 5' -54.3 NC_003401.1 + 132413 0.68 0.864532
Target:  5'- -cG-CGGGGCCGgGGGucCCGCgGGGGg -3'
miRNA:   3'- gaCaGUUUCGGCgCCUu-GGCGgUUCC- -5'
13160 5' -54.3 NC_003401.1 + 117600 0.68 0.856777
Target:  5'- ---aCAGacGGCCGCGGcgaccaauGGCCGCCGcGGg -3'
miRNA:   3'- gacaGUU--UCGGCGCC--------UUGGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 16658 0.69 0.848811
Target:  5'- -gGUCAAGGCUGCGGcGCgGCUg--- -3'
miRNA:   3'- gaCAGUUUCGGCGCCuUGgCGGuucc -5'
13160 5' -54.3 NC_003401.1 + 118353 0.69 0.848811
Target:  5'- ---cCAgcGcCCGCGGugccGCCGCCGGGGu -3'
miRNA:   3'- gacaGUuuC-GGCGCCu---UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 60333 0.69 0.83228
Target:  5'- aUGUCAcAGGaCCGCGGAGCaCGCaAAGu -3'
miRNA:   3'- gACAGU-UUC-GGCGCCUUG-GCGgUUCc -5'
13160 5' -54.3 NC_003401.1 + 20393 0.69 0.83228
Target:  5'- cCUGUCAagaGAGgCGCGGuuGCCgGCCcacuGGGg -3'
miRNA:   3'- -GACAGU---UUCgGCGCCu-UGG-CGGu---UCC- -5'
13160 5' -54.3 NC_003401.1 + 80547 0.69 0.82373
Target:  5'- --cUCAGAGCgGUGGuccguCCGCCAuGGg -3'
miRNA:   3'- gacAGUUUCGgCGCCuu---GGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 90055 0.69 0.82373
Target:  5'- gUGUCGGAGUgcCGGAaaagACUGCUAAGGg -3'
miRNA:   3'- gACAGUUUCGgcGCCU----UGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 132755 0.7 0.778454
Target:  5'- -aGggGAGGCCgGCGGAggACCGCCAugccGGGc -3'
miRNA:   3'- gaCagUUUCGG-CGCCU--UGGCGGU----UCC- -5'
13160 5' -54.3 NC_003401.1 + 125902 0.71 0.749595
Target:  5'- -cGUCGAGGCCGCcagcaguGGCCGCCuuGGu -3'
miRNA:   3'- gaCAGUUUCGGCGcc-----UUGGCGGuuCC- -5'
13160 5' -54.3 NC_003401.1 + 83180 0.71 0.742715
Target:  5'- aCUGUCGAuccaggggcaucuuGCaCGCGGcuggcagggaauuAACCGCUAAGGa -3'
miRNA:   3'- -GACAGUUu-------------CG-GCGCC-------------UUGGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 104076 0.71 0.739751
Target:  5'- uUGgCGGAGCCGUucGGCCGCCGAGa -3'
miRNA:   3'- gACaGUUUCGGCGccUUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 109506 0.71 0.729808
Target:  5'- ---cCGAGGCCGuCGGAGugacCCGUCAGGGc -3'
miRNA:   3'- gacaGUUUCGGC-GCCUU----GGCGGUUCC- -5'
13160 5' -54.3 NC_003401.1 + 68512 0.72 0.658313
Target:  5'- -gGUUAAAacCCGCGGGGCCGCCAc-- -3'
miRNA:   3'- gaCAGUUUc-GGCGCCUUGGCGGUucc -5'
13160 5' -54.3 NC_003401.1 + 132663 0.74 0.534735
Target:  5'- -cGUCGGGG-CGCGGcGCCGCCGGGc -3'
miRNA:   3'- gaCAGUUUCgGCGCCuUGGCGGUUCc -5'
13160 5' -54.3 NC_003401.1 + 10836 0.77 0.420265
Target:  5'- -cGUCGcuuGCCGCGGuuGCCGCCAcGGu -3'
miRNA:   3'- gaCAGUuu-CGGCGCCu-UGGCGGUuCC- -5'
13160 5' -54.3 NC_003401.1 + 121008 1.1 0.003468
Target:  5'- uCUGUCAAAGCCGCGGAACCGCCAAGGc -3'
miRNA:   3'- -GACAGUUUCGGCGCCUUGGCGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.