miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13161 5' -71.5 NC_003401.1 + 23785 0.67 0.25399
Target:  5'- gCCgCUCGCGgCgCCCGUguuuuugGCCUGCUGCc -3'
miRNA:   3'- -GGgGGGCGCgGgGGGCG-------CGGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21492 0.67 0.24324
Target:  5'- -gUCCCGCGCCUUuuuggCgGCGCagggcuucggggaCCGCCGCg -3'
miRNA:   3'- ggGGGGCGCGGGG-----GgCGCG-------------GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 127536 0.67 0.238527
Target:  5'- uCCUCCCGCGCgacacggagCCggaaCCGgGCCCGuuGg -3'
miRNA:   3'- -GGGGGGCGCG---------GGg---GGCgCGGGCggCg -5'
13161 5' -71.5 NC_003401.1 + 121625 0.67 0.238527
Target:  5'- gUCCUCGCcCCCUCCGCaaucCCCGCC-Cg -3'
miRNA:   3'- gGGGGGCGcGGGGGGCGc---GGGCGGcG- -5'
13161 5' -71.5 NC_003401.1 + 8210 0.67 0.238527
Target:  5'- -aCCCCGUGaggaCCCCGCGgucgagaCaCGCCGCu -3'
miRNA:   3'- ggGGGGCGCgg--GGGGCGCg------G-GCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 86356 0.67 0.233381
Target:  5'- gUCCCCGCuGUcauCUCCCGCgGCaCCGuuGCu -3'
miRNA:   3'- gGGGGGCG-CG---GGGGGCG-CG-GGCggCG- -5'
13161 5' -71.5 NC_003401.1 + 118526 0.67 0.228328
Target:  5'- gUCCCUG-GCCCCCUG-GCCCaCCGg -3'
miRNA:   3'- gGGGGGCgCGGGGGGCgCGGGcGGCg -5'
13161 5' -71.5 NC_003401.1 + 11042 0.68 0.217057
Target:  5'- gCCCCCugaCGCGCCagagcgaucucuuuCCCgGC-CCCGCCa- -3'
miRNA:   3'- -GGGGG---GCGCGG--------------GGGgCGcGGGCGGcg -5'
13161 5' -71.5 NC_003401.1 + 14174 0.68 0.213723
Target:  5'- gCUCCCGC-CCCugCCgGCGCCggaGCCGUu -3'
miRNA:   3'- gGGGGGCGcGGG--GGgCGCGGg--CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 10895 0.68 0.213723
Target:  5'- uUCgUCGCGCUUCCCugggagGCGCgCUGCCGCu -3'
miRNA:   3'- gGGgGGCGCGGGGGG------CGCG-GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 119996 0.68 0.21325
Target:  5'- gCCCCCGUcccugguggcgGCCgCCUGCGCgCUguuuagccucgguGCCGCu -3'
miRNA:   3'- gGGGGGCG-----------CGGgGGGCGCG-GG-------------CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 20608 0.68 0.209035
Target:  5'- gCCCUacgcugGCGCCUCCCcCGaCUGCCGCu -3'
miRNA:   3'- gGGGGg-----CGCGGGGGGcGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 69605 0.68 0.209035
Target:  5'- gCUCUC-CGCCCUUCGcCGaaaCCGCCGCa -3'
miRNA:   3'- gGGGGGcGCGGGGGGC-GCg--GGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 28832 0.68 0.199927
Target:  5'- gCCgCUCGCgaGUCCCCCGCGa--GCCGUg -3'
miRNA:   3'- -GGgGGGCG--CGGGGGGCGCgggCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 21311 0.68 0.199927
Target:  5'- gCCCUCGCGgCgguCCCCGaaGCCCugcGCCGCc -3'
miRNA:   3'- gGGGGGCGCgG---GGGGCg-CGGG---CGGCG- -5'
13161 5' -71.5 NC_003401.1 + 110092 0.68 0.199927
Target:  5'- gUCCCCGUGUgcaCCgUGCGCCUGCaGCa -3'
miRNA:   3'- gGGGGGCGCGg--GGgGCGCGGGCGgCG- -5'
13161 5' -71.5 NC_003401.1 + 41513 0.68 0.195503
Target:  5'- aCCaCCUCGUGgCCCgCgauuuucgagaGCGCCUGCUGCa -3'
miRNA:   3'- -GG-GGGGCGCgGGGgG-----------CGCGGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 64104 0.68 0.192891
Target:  5'- gCgCCCGCGCCacugaCCGCguuuggugguccgcgGCCCGuuGCg -3'
miRNA:   3'- gGgGGGCGCGGgg---GGCG---------------CGGGCggCG- -5'
13161 5' -71.5 NC_003401.1 + 122419 0.69 0.186913
Target:  5'- uUCCgCCGCGCagCgCGCGgCCGCUGCc -3'
miRNA:   3'- -GGGgGGCGCGggGgGCGCgGGCGGCG- -5'
13161 5' -71.5 NC_003401.1 + 163 0.69 0.174651
Target:  5'- gUCCCCCGCuCCCCUCGCGUuuUC-CCGa -3'
miRNA:   3'- -GGGGGGCGcGGGGGGCGCG--GGcGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.