miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13162 5' -54.5 NC_003401.1 + 103510 0.66 0.948221
Target:  5'- aCCAUaggccugCCCaUggUGCGCAACcuGGCGGa -3'
miRNA:   3'- gGGUAg------GGG-AuuGUGCGUUGu-CCGCC- -5'
13162 5' -54.5 NC_003401.1 + 132280 0.66 0.948221
Target:  5'- cCCCGcgcgCCCCccgGGCccGCGCGcCGGGCGc -3'
miRNA:   3'- -GGGUa---GGGGa--UUG--UGCGUuGUCCGCc -5'
13162 5' -54.5 NC_003401.1 + 64684 0.66 0.948221
Target:  5'- aUCCGucUCCCCUGGCuaccgcccACGCGGCAacCGGu -3'
miRNA:   3'- -GGGU--AGGGGAUUG--------UGCGUUGUccGCC- -5'
13162 5' -54.5 NC_003401.1 + 69574 0.66 0.943809
Target:  5'- uUCCAUCCuCUUGGCG-GgGACAuugGGCGGu -3'
miRNA:   3'- -GGGUAGG-GGAUUGUgCgUUGU---CCGCC- -5'
13162 5' -54.5 NC_003401.1 + 17978 0.66 0.943355
Target:  5'- gUCAUCCgaaaacggccucaCCUGuaACGCAACAGGCu- -3'
miRNA:   3'- gGGUAGG-------------GGAUugUGCGUUGUCCGcc -5'
13162 5' -54.5 NC_003401.1 + 128436 0.66 0.939159
Target:  5'- gCCCA-CCUCUAAC-CGCAACguucuaucgAGGCc- -3'
miRNA:   3'- -GGGUaGGGGAUUGuGCGUUG---------UCCGcc -5'
13162 5' -54.5 NC_003401.1 + 88249 0.66 0.939159
Target:  5'- gUgGUCgCUUUGGCGCcgGCAACAGGCGa -3'
miRNA:   3'- gGgUAG-GGGAUUGUG--CGUUGUCCGCc -5'
13162 5' -54.5 NC_003401.1 + 47955 0.66 0.939159
Target:  5'- aCCCGUCCCC--ACACGUauaaagucuuaGACGuGCGu -3'
miRNA:   3'- -GGGUAGGGGauUGUGCG-----------UUGUcCGCc -5'
13162 5' -54.5 NC_003401.1 + 13020 0.66 0.929137
Target:  5'- gCCAUCUCCgugacgGACuGCGUGGC-GGUGGa -3'
miRNA:   3'- gGGUAGGGGa-----UUG-UGCGUUGuCCGCC- -5'
13162 5' -54.5 NC_003401.1 + 127540 0.66 0.929137
Target:  5'- gCCGUCCUCc--CGCGCGACAcGGagcCGGa -3'
miRNA:   3'- gGGUAGGGGauuGUGCGUUGU-CC---GCC- -5'
13162 5' -54.5 NC_003401.1 + 104537 0.66 0.929137
Target:  5'- gCCGUCCUCgUGGCGCGaAGCAGGg-- -3'
miRNA:   3'- gGGUAGGGG-AUUGUGCgUUGUCCgcc -5'
13162 5' -54.5 NC_003401.1 + 9356 0.67 0.923762
Target:  5'- aCCGaCCCCUAGCgccgGCGCccuACuGGcCGGg -3'
miRNA:   3'- gGGUaGGGGAUUG----UGCGu--UGuCC-GCC- -5'
13162 5' -54.5 NC_003401.1 + 49071 0.67 0.923762
Target:  5'- gCC--CCCCgggAGCAC-CAGcCAGGCGGu -3'
miRNA:   3'- gGGuaGGGGa--UUGUGcGUU-GUCCGCC- -5'
13162 5' -54.5 NC_003401.1 + 40349 0.67 0.918146
Target:  5'- uUUcgCCCCUGACaACGUAAUuGGCGu -3'
miRNA:   3'- gGGuaGGGGAUUG-UGCGUUGuCCGCc -5'
13162 5' -54.5 NC_003401.1 + 22331 0.67 0.918146
Target:  5'- gUCGUCCCCggGAUugGCAcACAGcuuuuuaccGCGGc -3'
miRNA:   3'- gGGUAGGGGa-UUGugCGU-UGUC---------CGCC- -5'
13162 5' -54.5 NC_003401.1 + 40286 0.67 0.918146
Target:  5'- aCCGUCCCa--ACGCGCAGCccaGCGu -3'
miRNA:   3'- gGGUAGGGgauUGUGCGUUGuc-CGCc -5'
13162 5' -54.5 NC_003401.1 + 57485 0.67 0.918146
Target:  5'- aCCCGUUCgUUGGC-CGCuuUGGGUGGa -3'
miRNA:   3'- -GGGUAGGgGAUUGuGCGuuGUCCGCC- -5'
13162 5' -54.5 NC_003401.1 + 47820 0.67 0.918146
Target:  5'- aCCCGUCgCaCUGACcCGCGACGGaucgcCGGu -3'
miRNA:   3'- -GGGUAGgG-GAUUGuGCGUUGUCc----GCC- -5'
13162 5' -54.5 NC_003401.1 + 126221 0.67 0.90619
Target:  5'- aUCCAgCCCC-AGCACGuCGACgAGGUGc -3'
miRNA:   3'- -GGGUaGGGGaUUGUGC-GUUG-UCCGCc -5'
13162 5' -54.5 NC_003401.1 + 132373 0.67 0.90619
Target:  5'- cCCCGgccgCCCCgcgcCGCGCGcCGGGCc- -3'
miRNA:   3'- -GGGUa---GGGGauu-GUGCGUuGUCCGcc -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.