miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13163 3' -59.1 NC_003401.1 + 68503 0.66 0.786136
Target:  5'- gGGUUcCcGGGUuaaaaccCGCGGGGCCG-CCa -3'
miRNA:   3'- -CCAGaGaCCCAcu-----GCGUCCCGGCaGG- -5'
13163 3' -59.1 NC_003401.1 + 107405 0.66 0.777113
Target:  5'- -aUCUCuaUGGuUGGaccgaGCGGGGCgGUCCa -3'
miRNA:   3'- ccAGAG--ACCcACUg----CGUCCCGgCAGG- -5'
13163 3' -59.1 NC_003401.1 + 118012 0.66 0.758703
Target:  5'- cGGccgCUCUu--UGGCGcCGGGGUCGUCCg -3'
miRNA:   3'- -CCa--GAGAcccACUGC-GUCCCGGCAGG- -5'
13163 3' -59.1 NC_003401.1 + 57151 0.67 0.749333
Target:  5'- -uUCUCUGGGUGgacgagGCGUguauguggaacGGGGCCcuggCCg -3'
miRNA:   3'- ccAGAGACCCAC------UGCG-----------UCCCGGca--GG- -5'
13163 3' -59.1 NC_003401.1 + 93621 0.67 0.739866
Target:  5'- uGUCUcCUGGGUGAgUGCuaaaaagccAGGGUgGUCg -3'
miRNA:   3'- cCAGA-GACCCACU-GCG---------UCCCGgCAGg -5'
13163 3' -59.1 NC_003401.1 + 104163 0.67 0.734142
Target:  5'- cGGUCUCgaugauauugcgacGGG-GGCGCGGGGUaagaGUUg -3'
miRNA:   3'- -CCAGAGa-------------CCCaCUGCGUCCCGg---CAGg -5'
13163 3' -59.1 NC_003401.1 + 132680 0.67 0.730309
Target:  5'- gGGgcgcCUCggcgGGGcccGGCGCGGGGCgCGaCCg -3'
miRNA:   3'- -CCa---GAGa---CCCa--CUGCGUCCCG-GCaGG- -5'
13163 3' -59.1 NC_003401.1 + 71427 0.67 0.720671
Target:  5'- aGGUUaugcuucauggUCUGGGUGGCGUggauugcacGGGGaCgGUCg -3'
miRNA:   3'- -CCAG-----------AGACCCACUGCG---------UCCC-GgCAGg -5'
13163 3' -59.1 NC_003401.1 + 119172 0.67 0.71096
Target:  5'- aGUUUgaGGGgcUGAC-CAGGGCCG-CCu -3'
miRNA:   3'- cCAGAgaCCC--ACUGcGUCCCGGCaGG- -5'
13163 3' -59.1 NC_003401.1 + 132424 0.68 0.641667
Target:  5'- gGGUCcCgcgGGG-GGC-CGGGGCCGcCCc -3'
miRNA:   3'- -CCAGaGa--CCCaCUGcGUCCCGGCaGG- -5'
13163 3' -59.1 NC_003401.1 + 14533 0.7 0.55137
Target:  5'- uGGUCUUgGGGguccggGGCGaCGGGcuugcggucgcgcGCCGUCCa -3'
miRNA:   3'- -CCAGAGaCCCa-----CUGC-GUCC-------------CGGCAGG- -5'
13163 3' -59.1 NC_003401.1 + 124509 1.13 0.000833
Target:  5'- uGGUCUCUGGGUGACGCAGGGCCGUCCu -3'
miRNA:   3'- -CCAGAGACCCACUGCGUCCCGGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.