miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13163 5' -55 NC_003401.1 + 122415 0.65 0.907722
Target:  5'- uGCGGuuaACGGCGCuCuGCGCCACc----- -3'
miRNA:   3'- -CGUC---UGUCGCG-GuCGCGGUGcuaauu -5'
13163 5' -55 NC_003401.1 + 23699 0.66 0.901283
Target:  5'- gGCGGaccgGCAGCGCCGGUuggacGCgGCGGa--- -3'
miRNA:   3'- -CGUC----UGUCGCGGUCG-----CGgUGCUaauu -5'
13163 5' -55 NC_003401.1 + 118110 0.66 0.901283
Target:  5'- aCGGugGGgGCCGcGCGCCACc----- -3'
miRNA:   3'- cGUCugUCgCGGU-CGCGGUGcuaauu -5'
13163 5' -55 NC_003401.1 + 28349 0.66 0.880491
Target:  5'- -gGGAgGGCGCUcaugguucgGGUGUCGCGGUUAc -3'
miRNA:   3'- cgUCUgUCGCGG---------UCGCGGUGCUAAUu -5'
13163 5' -55 NC_003401.1 + 22211 0.66 0.873084
Target:  5'- cGCuGuuACgAGCGCCGGUGUUGCGGUUGc -3'
miRNA:   3'- -CGuC--UG-UCGCGGUCGCGGUGCUAAUu -5'
13163 5' -55 NC_003401.1 + 19303 0.66 0.873084
Target:  5'- gGUAGACGGUGUugaCGGCGCUGCGc---- -3'
miRNA:   3'- -CGUCUGUCGCG---GUCGCGGUGCuaauu -5'
13163 5' -55 NC_003401.1 + 132375 0.66 0.873084
Target:  5'- gGCGG-CGGCGCCggccgGGCGCCucCGGg--- -3'
miRNA:   3'- -CGUCuGUCGCGG-----UCGCGGu-GCUaauu -5'
13163 5' -55 NC_003401.1 + 22612 0.66 0.873084
Target:  5'- uGCcacCAGCGCCAcGCucgccgugcucgGCCACGGUUGAc -3'
miRNA:   3'- -CGucuGUCGCGGU-CG------------CGGUGCUAAUU- -5'
13163 5' -55 NC_003401.1 + 132454 0.67 0.865446
Target:  5'- gGCcGGCGGCGcCCGGCG-CGCGGg--- -3'
miRNA:   3'- -CGuCUGUCGC-GGUCGCgGUGCUaauu -5'
13163 5' -55 NC_003401.1 + 23618 0.67 0.841219
Target:  5'- gGCAG-CAG-GCCaaaaacacgGGCGCCGCGAg--- -3'
miRNA:   3'- -CGUCuGUCgCGG---------UCGCGGUGCUaauu -5'
13163 5' -55 NC_003401.1 + 72795 0.67 0.829276
Target:  5'- uCAGGCGGCcCCugaggucacucguGCGCCACGGUUu- -3'
miRNA:   3'- cGUCUGUCGcGGu------------CGCGGUGCUAAuu -5'
13163 5' -55 NC_003401.1 + 126727 0.68 0.824043
Target:  5'- cGCAGAUGGCGUaucucGCGCCACu----- -3'
miRNA:   3'- -CGUCUGUCGCGgu---CGCGGUGcuaauu -5'
13163 5' -55 NC_003401.1 + 20551 0.68 0.824043
Target:  5'- cGCGGGCGGCgGCCGGUcaacGCCAgGuccAUUAAa -3'
miRNA:   3'- -CGUCUGUCG-CGGUCG----CGGUgC---UAAUU- -5'
13163 5' -55 NC_003401.1 + 46543 0.68 0.824043
Target:  5'- uGCAGGCGGUaGCaCGGgcaCGCCACGAc--- -3'
miRNA:   3'- -CGUCUGUCG-CG-GUC---GCGGUGCUaauu -5'
13163 5' -55 NC_003401.1 + 110684 0.68 0.787532
Target:  5'- cGCAGAgAGgGCCAGUGUcuCAUGAg--- -3'
miRNA:   3'- -CGUCUgUCgCGGUCGCG--GUGCUaauu -5'
13163 5' -55 NC_003401.1 + 132510 0.68 0.787532
Target:  5'- --cGGCGGCGCC-GCGCCcCGAc--- -3'
miRNA:   3'- cguCUGUCGCGGuCGCGGuGCUaauu -5'
13163 5' -55 NC_003401.1 + 9517 0.68 0.778008
Target:  5'- cCAGuAgGGCGCCGGCGCUAgGGg--- -3'
miRNA:   3'- cGUC-UgUCGCGGUCGCGGUgCUaauu -5'
13163 5' -55 NC_003401.1 + 78232 0.68 0.778008
Target:  5'- cGguGGCGGCGCCGGCaGgCACa----- -3'
miRNA:   3'- -CguCUGUCGCGGUCG-CgGUGcuaauu -5'
13163 5' -55 NC_003401.1 + 23654 0.69 0.768346
Target:  5'- gGCAGGUGGCGCCGcGCuuucccccacGCCGCGAUUu- -3'
miRNA:   3'- -CGUCUGUCGCGGU-CG----------CGGUGCUAAuu -5'
13163 5' -55 NC_003401.1 + 27503 0.69 0.768346
Target:  5'- gGCAaACAGCGCCacuAGCGCCA-GAa--- -3'
miRNA:   3'- -CGUcUGUCGCGG---UCGCGGUgCUaauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.