Results 21 - 29 of 29 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 13163 | 5' | -55 | NC_003401.1 | + | 80413 | 0.69 | 0.758553 |
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Target: 5'- -aGGugGGCGCCAGguaGCCAUGGc--- -3' miRNA: 3'- cgUCugUCGCGGUCg--CGGUGCUaauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 46312 | 0.7 | 0.708008 |
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Target: 5'- cCAGAUAGCGUCAuGUGCCGCcgcGUUAAu -3' miRNA: 3'- cGUCUGUCGCGGU-CGCGGUGc--UAAUU- -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 122097 | 0.7 | 0.708008 |
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Target: 5'- gGCAcGGCcGCGCCAGCcGCCGCa----- -3' miRNA: 3'- -CGU-CUGuCGCGGUCG-CGGUGcuaauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 128469 | 0.7 | 0.676778 |
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Target: 5'- cGCGuGCAGCGCCAGCuCC-CGGUg-- -3' miRNA: 3'- -CGUcUGUCGCGGUCGcGGuGCUAauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 121926 | 0.7 | 0.676778 |
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Target: 5'- aGCGGGgGGCGCgGGUGCgGCGGc--- -3' miRNA: 3'- -CGUCUgUCGCGgUCGCGgUGCUaauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 88519 | 0.7 | 0.676778 |
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Target: 5'- cGCGGcACcuguuaGGCGCCGGCGCCGacaGGUUc- -3' miRNA: 3'- -CGUC-UG------UCGCGGUCGCGGUg--CUAAuu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 20384 | 0.73 | 0.530239 |
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Target: 5'- -----gAGUGCCAGCGCCGCGAg--- -3' miRNA: 3'- cgucugUCGCGGUCGCGGUGCUaauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 27597 | 0.75 | 0.388053 |
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Target: 5'- gGCGGGCAcGCGCCAGCGCgGgGGg--- -3' miRNA: 3'- -CGUCUGU-CGCGGUCGCGgUgCUaauu -5' |
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| 13163 | 5' | -55 | NC_003401.1 | + | 124466 | 1.08 | 0.002872 |
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Target: 5'- gGCAGACAGCGCCAGCGCCACGAUUAAa -3' miRNA: 3'- -CGUCUGUCGCGGUCGCGGUGCUAAUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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