Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13163 | 5' | -55 | NC_003401.1 | + | 9517 | 0.68 | 0.778008 |
Target: 5'- cCAGuAgGGCGCCGGCGCUAgGGg--- -3' miRNA: 3'- cGUC-UgUCGCGGUCGCGGUgCUaauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 78232 | 0.68 | 0.778008 |
Target: 5'- cGguGGCGGCGCCGGCaGgCACa----- -3' miRNA: 3'- -CguCUGUCGCGGUCG-CgGUGcuaauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 27503 | 0.69 | 0.768346 |
Target: 5'- gGCAaACAGCGCCacuAGCGCCA-GAa--- -3' miRNA: 3'- -CGUcUGUCGCGG---UCGCGGUgCUaauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 46312 | 0.7 | 0.708008 |
Target: 5'- cCAGAUAGCGUCAuGUGCCGCcgcGUUAAu -3' miRNA: 3'- cGUCUGUCGCGGU-CGCGGUGc--UAAUU- -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 122097 | 0.7 | 0.708008 |
Target: 5'- gGCAcGGCcGCGCCAGCcGCCGCa----- -3' miRNA: 3'- -CGU-CUGuCGCGGUCG-CGGUGcuaauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 128469 | 0.7 | 0.676778 |
Target: 5'- cGCGuGCAGCGCCAGCuCC-CGGUg-- -3' miRNA: 3'- -CGUcUGUCGCGGUCGcGGuGCUAauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 20384 | 0.73 | 0.530239 |
Target: 5'- -----gAGUGCCAGCGCCGCGAg--- -3' miRNA: 3'- cgucugUCGCGGUCGCGGUGCUaauu -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 124466 | 1.08 | 0.002872 |
Target: 5'- gGCAGACAGCGCCAGCGCCACGAUUAAa -3' miRNA: 3'- -CGUCUGUCGCGGUCGCGGUGCUAAUU- -5' |
|||||||
13163 | 5' | -55 | NC_003401.1 | + | 122415 | 0.65 | 0.907722 |
Target: 5'- uGCGGuuaACGGCGCuCuGCGCCACc----- -3' miRNA: 3'- -CGUC---UGUCGCG-GuCGCGGUGcuaauu -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home