miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13164 3' -54.2 NC_003401.1 + 115265 0.66 0.952167
Target:  5'- -aCCgggGGACUugCACcccacCGGGgGACGUg -3'
miRNA:   3'- cgGGa--CUUGAugGUGu----GCCCgUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 80179 0.66 0.952167
Target:  5'- uGCCCUcgg--GCCuCugGGGUAGCGg -3'
miRNA:   3'- -CGGGAcuugaUGGuGugCCCGUUGCg -5'
13164 3' -54.2 NC_003401.1 + 63279 0.66 0.951755
Target:  5'- aGCCCuUGAuauuGCUACaUACACGuGGCuugucugGACGUu -3'
miRNA:   3'- -CGGG-ACU----UGAUG-GUGUGC-CCG-------UUGCG- -5'
13164 3' -54.2 NC_003401.1 + 106002 0.66 0.947938
Target:  5'- aGCCCcauGCcGCCGCGCGccuGGCcaaGGCGCu -3'
miRNA:   3'- -CGGGacuUGaUGGUGUGC---CCG---UUGCG- -5'
13164 3' -54.2 NC_003401.1 + 100676 0.66 0.947502
Target:  5'- uGCCgaGAACcACCACcgacacgucgaGCGccaaacccccaccGGCGACGCu -3'
miRNA:   3'- -CGGgaCUUGaUGGUG-----------UGC-------------CCGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 18145 0.66 0.946179
Target:  5'- cGCUCgGGGCgAUCuggcguuucugguCACGGGCGugGCa -3'
miRNA:   3'- -CGGGaCUUGaUGGu------------GUGCCCGUugCG- -5'
13164 3' -54.2 NC_003401.1 + 132605 0.66 0.943468
Target:  5'- gGCCCggcgGAGCggcACC-CGgGGGCGGCc- -3'
miRNA:   3'- -CGGGa---CUUGa--UGGuGUgCCCGUUGcg -5'
13164 3' -54.2 NC_003401.1 + 12979 0.66 0.943468
Target:  5'- ----cGAACUGCaGCugGGGC-GCGCu -3'
miRNA:   3'- cgggaCUUGAUGgUGugCCCGuUGCG- -5'
13164 3' -54.2 NC_003401.1 + 56021 0.66 0.938755
Target:  5'- gGCCUUGAAUaugGCCAgGauGGCccACGCa -3'
miRNA:   3'- -CGGGACUUGa--UGGUgUgcCCGu-UGCG- -5'
13164 3' -54.2 NC_003401.1 + 132675 0.66 0.938755
Target:  5'- gGCCCgGGGC-GCCucgGCGGGgccCGGCGCg -3'
miRNA:   3'- -CGGGaCUUGaUGGug-UGCCC---GUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 16215 0.66 0.933798
Target:  5'- cGCCCUucGCUuuucuaACCACACGGuuAGCa- -3'
miRNA:   3'- -CGGGAcuUGA------UGGUGUGCCcgUUGcg -5'
13164 3' -54.2 NC_003401.1 + 104685 0.66 0.932263
Target:  5'- cGCCCggcgaUGGACUcgguggccagacugACCAaucaccuucacgUGCGcGGCAGCGCg -3'
miRNA:   3'- -CGGG-----ACUUGA--------------UGGU------------GUGC-CCGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 80493 0.66 0.928594
Target:  5'- cGCCCaUGcGGCUACCGCcguGGGCGcagAUGUg -3'
miRNA:   3'- -CGGG-AC-UUGAUGGUGug-CCCGU---UGCG- -5'
13164 3' -54.2 NC_003401.1 + 9235 0.66 0.928594
Target:  5'- uGCCgUGGACUAUCgaggACGCGGGUgcccuaauagagGAuCGCc -3'
miRNA:   3'- -CGGgACUUGAUGG----UGUGCCCG------------UU-GCG- -5'
13164 3' -54.2 NC_003401.1 + 8858 0.66 0.928594
Target:  5'- -aCCUGGGgUACUuCGCGGG--GCGCg -3'
miRNA:   3'- cgGGACUUgAUGGuGUGCCCguUGCG- -5'
13164 3' -54.2 NC_003401.1 + 97048 0.67 0.925354
Target:  5'- uCCCUGGucuucAuggcgucgucaauucCUGCCGCACGGGCugauAACGg -3'
miRNA:   3'- cGGGACU-----U---------------GAUGGUGUGCCCG----UUGCg -5'
13164 3' -54.2 NC_003401.1 + 85602 0.67 0.922585
Target:  5'- uGCaggCUGAGCUguugacaGCCAC-CGGGCAGgGa -3'
miRNA:   3'- -CGg--GACUUGA-------UGGUGuGCCCGUUgCg -5'
13164 3' -54.2 NC_003401.1 + 128506 0.67 0.917446
Target:  5'- cGCCCUGAcacuuggcacACUAgUagaauaugauguGCGCGuGCAGCGCc -3'
miRNA:   3'- -CGGGACU----------UGAUgG------------UGUGCcCGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 72279 0.67 0.917446
Target:  5'- uCCCgUGcAGCguCCAUACGGGCAcUGCg -3'
miRNA:   3'- cGGG-AC-UUGauGGUGUGCCCGUuGCG- -5'
13164 3' -54.2 NC_003401.1 + 132222 0.67 0.917446
Target:  5'- cGCCCggccgGcGCcGCCGC-CGGGCcGCGg -3'
miRNA:   3'- -CGGGa----CuUGaUGGUGuGCCCGuUGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.