miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13164 3' -54.2 NC_003401.1 + 3149 0.69 0.842533
Target:  5'- -aCgUGAACcACCGCACGGaGCAcacuuucuagcgagaACGCu -3'
miRNA:   3'- cgGgACUUGaUGGUGUGCC-CGU---------------UGCG- -5'
13164 3' -54.2 NC_003401.1 + 8858 0.66 0.928594
Target:  5'- -aCCUGGGgUACUuCGCGGG--GCGCg -3'
miRNA:   3'- cgGGACUUgAUGGuGUGCCCguUGCG- -5'
13164 3' -54.2 NC_003401.1 + 9235 0.66 0.928594
Target:  5'- uGCCgUGGACUAUCgaggACGCGGGUgcccuaauagagGAuCGCc -3'
miRNA:   3'- -CGGgACUUGAUGG----UGUGCCCG------------UU-GCG- -5'
13164 3' -54.2 NC_003401.1 + 12979 0.66 0.943468
Target:  5'- ----cGAACUGCaGCugGGGC-GCGCu -3'
miRNA:   3'- cgggaCUUGAUGgUGugCCCGuUGCG- -5'
13164 3' -54.2 NC_003401.1 + 13552 0.69 0.825693
Target:  5'- -aCCUGGGCgaugucgGCCGCACGGucguuaacguggccaGUAGCGUg -3'
miRNA:   3'- cgGGACUUGa------UGGUGUGCC---------------CGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 15032 0.67 0.917446
Target:  5'- uUCCgu-GC-GCCACGCGcgacGGCGACGCg -3'
miRNA:   3'- cGGGacuUGaUGGUGUGC----CCGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 15052 0.72 0.666762
Target:  5'- cGUCCUGGcaucucugGCcGCCAgGCGGGgCGugGCg -3'
miRNA:   3'- -CGGGACU--------UGaUGGUgUGCCC-GUugCG- -5'
13164 3' -54.2 NC_003401.1 + 16215 0.66 0.933798
Target:  5'- cGCCCUucGCUuuucuaACCACACGGuuAGCa- -3'
miRNA:   3'- -CGGGAcuUGA------UGGUGUGCCcgUUGcg -5'
13164 3' -54.2 NC_003401.1 + 17328 0.68 0.885315
Target:  5'- cGCCUgcaAACguucaaggGCCACGgGGGCuACGCc -3'
miRNA:   3'- -CGGGac-UUGa-------UGGUGUgCCCGuUGCG- -5'
13164 3' -54.2 NC_003401.1 + 17336 0.67 0.905316
Target:  5'- uCCCUGcgGACU-CCGCugGcGCGGCGUc -3'
miRNA:   3'- cGGGAC--UUGAuGGUGugCcCGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 17474 0.69 0.85544
Target:  5'- cGCCCcguUGGAUUccggcgGCgACGCGGacGCGGCGCg -3'
miRNA:   3'- -CGGG---ACUUGA------UGgUGUGCC--CGUUGCG- -5'
13164 3' -54.2 NC_003401.1 + 17482 0.69 0.830824
Target:  5'- gGCCCuUGAACguUugCAgGCGGGUGAgGUu -3'
miRNA:   3'- -CGGG-ACUUG--AugGUgUGCCCGUUgCG- -5'
13164 3' -54.2 NC_003401.1 + 18145 0.66 0.946179
Target:  5'- cGCUCgGGGCgAUCuggcguuucugguCACGGGCGugGCa -3'
miRNA:   3'- -CGGGaCUUGaUGGu------------GUGCCCGUugCG- -5'
13164 3' -54.2 NC_003401.1 + 19649 0.79 0.335428
Target:  5'- cGCCCUgGAGCUGCCGgGCGGGguGacaGUg -3'
miRNA:   3'- -CGGGA-CUUGAUGGUgUGCCCguUg--CG- -5'
13164 3' -54.2 NC_003401.1 + 19771 0.72 0.665727
Target:  5'- gGCCgagGAGCUGCCGCAguuucgcCGGGCcaccgaaccgcGGCGCg -3'
miRNA:   3'- -CGGga-CUUGAUGGUGU-------GCCCG-----------UUGCG- -5'
13164 3' -54.2 NC_003401.1 + 21331 0.72 0.697643
Target:  5'- aGCCCUGcGCcGCCaaaaagGCGCGGGacccguGCGCg -3'
miRNA:   3'- -CGGGACuUGaUGG------UGUGCCCgu----UGCG- -5'
13164 3' -54.2 NC_003401.1 + 23596 0.7 0.795434
Target:  5'- cGCgCCUGGacgGCUGCCAC-CuGGCAGCa- -3'
miRNA:   3'- -CG-GGACU---UGAUGGUGuGcCCGUUGcg -5'
13164 3' -54.2 NC_003401.1 + 26970 0.72 0.697643
Target:  5'- gGCCCUGAACagccgccauaauUGCUACACGuaaacuaaGGUAccACGCg -3'
miRNA:   3'- -CGGGACUUG------------AUGGUGUGC--------CCGU--UGCG- -5'
13164 3' -54.2 NC_003401.1 + 27563 0.73 0.6086
Target:  5'- gGCCCgcgcGGACUGuCCGCauucuggaucgagggGCGGGCA-CGCg -3'
miRNA:   3'- -CGGGa---CUUGAU-GGUG---------------UGCCCGUuGCG- -5'
13164 3' -54.2 NC_003401.1 + 27733 0.67 0.898887
Target:  5'- cGCCCcucgauccagaaugcGGACaguCCGCGCGGGCcccgguggaggccAGCGCa -3'
miRNA:   3'- -CGGGa--------------CUUGau-GGUGUGCCCG-------------UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.