miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13164 5' -53.7 NC_003401.1 + 85874 0.66 0.961266
Target:  5'- cGGUGUgucCGCGCGugugcGCGCUccGCCUugaguuGCGCa -3'
miRNA:   3'- cCUACAa--GCGCGU-----CGUGA--UGGG------UGCG- -5'
13164 5' -53.7 NC_003401.1 + 90905 0.66 0.953665
Target:  5'- cGGAUGUgacCGCAGCGCUcugagugaACaaACGCc -3'
miRNA:   3'- -CCUACAagcGCGUCGUGA--------UGggUGCG- -5'
13164 5' -53.7 NC_003401.1 + 35496 0.66 0.95326
Target:  5'- uGAUGUUCGUaaGCGGCAUcagcgcgguuacuUGCuuCCAUGCc -3'
miRNA:   3'- cCUACAAGCG--CGUCGUG-------------AUG--GGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 11851 0.66 0.949511
Target:  5'- ---aGUUCGCcggugGCcgaGGCGCUGCaCACGCg -3'
miRNA:   3'- ccuaCAAGCG-----CG---UCGUGAUGgGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 45778 0.66 0.945116
Target:  5'- --uUGuUUCGCGCAGUACgugugACCUcCGUc -3'
miRNA:   3'- ccuAC-AAGCGCGUCGUGa----UGGGuGCG- -5'
13164 5' -53.7 NC_003401.1 + 100755 0.67 0.940479
Target:  5'- gGGAUGUcuUCGaUGguGCACgGCuCUAUGCc -3'
miRNA:   3'- -CCUACA--AGC-GCguCGUGaUG-GGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 23653 0.67 0.935595
Target:  5'- cGGcagGUg-GCGCcGCGCUuuccCCCACGCc -3'
miRNA:   3'- -CCua-CAagCGCGuCGUGAu---GGGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 52934 0.67 0.925085
Target:  5'- ---gGUUCGUGCAGCACacgUACCauuuuaAgGCa -3'
miRNA:   3'- ccuaCAAGCGCGUCGUG---AUGGg-----UgCG- -5'
13164 5' -53.7 NC_003401.1 + 123360 0.67 0.925085
Target:  5'- aGGcgGUUUGgcCGCGGCGCggcCCCugGa -3'
miRNA:   3'- -CCuaCAAGC--GCGUCGUGau-GGGugCg -5'
13164 5' -53.7 NC_003401.1 + 22990 0.67 0.919458
Target:  5'- aGGGuUGUaauuUCGCGgGGCcCUuugggcCCCGCGCg -3'
miRNA:   3'- -CCU-ACA----AGCGCgUCGuGAu-----GGGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 21672 0.67 0.919458
Target:  5'- cGGAg--UCGUGCGGcCGCgauuccAgCCACGCa -3'
miRNA:   3'- -CCUacaAGCGCGUC-GUGa-----UgGGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 119777 0.67 0.913584
Target:  5'- aGGGUGUcggcgaGCGCcGCACcggACCCAguuccCGCa -3'
miRNA:   3'- -CCUACAag----CGCGuCGUGa--UGGGU-----GCG- -5'
13164 5' -53.7 NC_003401.1 + 20077 0.67 0.913584
Target:  5'- aGAUGUUUuuGCGGgACggGCgCCGCGCa -3'
miRNA:   3'- cCUACAAGcgCGUCgUGa-UG-GGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 128476 0.67 0.912982
Target:  5'- uGAUGUgcgCGUGCAGCGCcagcuCCCGgugacauUGCa -3'
miRNA:   3'- cCUACAa--GCGCGUCGUGau---GGGU-------GCG- -5'
13164 5' -53.7 NC_003401.1 + 8602 0.68 0.901097
Target:  5'- ------aCGaCGCuGCACUGCCuCACGCc -3'
miRNA:   3'- ccuacaaGC-GCGuCGUGAUGG-GUGCG- -5'
13164 5' -53.7 NC_003401.1 + 9484 0.68 0.894491
Target:  5'- ------aCGCGCAGCugUcgGCCCuCGCc -3'
miRNA:   3'- ccuacaaGCGCGUCGugA--UGGGuGCG- -5'
13164 5' -53.7 NC_003401.1 + 93128 0.68 0.887646
Target:  5'- aGAUGUagUCGUuaGCcaGGCACacCCCGCGCa -3'
miRNA:   3'- cCUACA--AGCG--CG--UCGUGauGGGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 19946 0.68 0.880568
Target:  5'- -uGUGUUCGCGaGGCGCgcgACCC-CGa -3'
miRNA:   3'- ccUACAAGCGCgUCGUGa--UGGGuGCg -5'
13164 5' -53.7 NC_003401.1 + 124988 0.68 0.879847
Target:  5'- gGGAaacUGUcauguccgcaagcUCGgGCGGCACguacGCCCACuGCc -3'
miRNA:   3'- -CCU---ACA-------------AGCgCGUCGUGa---UGGGUG-CG- -5'
13164 5' -53.7 NC_003401.1 + 107181 0.69 0.865727
Target:  5'- gGGAUuUUCGCGCccguGUACUguuuuuugACCUugGCu -3'
miRNA:   3'- -CCUAcAAGCGCGu---CGUGA--------UGGGugCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.