Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 117890 | 0.7 | 0.798202 |
Target: 5'- cGGggGUUCG-GCGGCGgUgGCaCCGCGCc -3' miRNA: 3'- -CCuaCAAGCgCGUCGUgA-UG-GGUGCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 63677 | 0.7 | 0.78897 |
Target: 5'- cGGUGUUCGUGCcGC-CUGCaagaggCGCGCg -3' miRNA: 3'- cCUACAAGCGCGuCGuGAUGg-----GUGCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 80285 | 0.71 | 0.779592 |
Target: 5'- gGGGUcGUagUCGC-CAGCACgACCCugGUu -3' miRNA: 3'- -CCUA-CA--AGCGcGUCGUGaUGGGugCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 14863 | 0.71 | 0.760433 |
Target: 5'- cGGGUGguacUCGUGCGcGCGCg--CCACGCc -3' miRNA: 3'- -CCUACa---AGCGCGU-CGUGaugGGUGCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 94443 | 0.73 | 0.669505 |
Target: 5'- gGGAgcagcUGgg-GCGCAGCAUUGCCCA-GCa -3' miRNA: 3'- -CCU-----ACaagCGCGUCGUGAUGGGUgCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 29757 | 0.77 | 0.420192 |
Target: 5'- cGAUGUUCGCGCGGUACacgggauuCCgGCGUg -3' miRNA: 3'- cCUACAAGCGCGUCGUGau------GGgUGCG- -5' |
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13164 | 5' | -53.7 | NC_003401.1 | + | 125289 | 1.15 | 0.001726 |
Target: 5'- aGGAUGUUCGCGCAGCACUACCCACGCa -3' miRNA: 3'- -CCUACAAGCGCGUCGUGAUGGGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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