miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13164 5' -53.7 NC_003401.1 + 19946 0.68 0.880568
Target:  5'- -uGUGUUCGCGaGGCGCgcgACCC-CGa -3'
miRNA:   3'- ccUACAAGCGCgUCGUGa--UGGGuGCg -5'
13164 5' -53.7 NC_003401.1 + 107181 0.69 0.865727
Target:  5'- gGGAUuUUCGCGCccguGUACUguuuuuugACCUugGCu -3'
miRNA:   3'- -CCUAcAAGCGCGu---CGUGA--------UGGGugCG- -5'
13164 5' -53.7 NC_003401.1 + 117890 0.7 0.798202
Target:  5'- cGGggGUUCG-GCGGCGgUgGCaCCGCGCc -3'
miRNA:   3'- -CCuaCAAGCgCGUCGUgA-UG-GGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 63677 0.7 0.78897
Target:  5'- cGGUGUUCGUGCcGC-CUGCaagaggCGCGCg -3'
miRNA:   3'- cCUACAAGCGCGuCGuGAUGg-----GUGCG- -5'
13164 5' -53.7 NC_003401.1 + 94443 0.73 0.669505
Target:  5'- gGGAgcagcUGgg-GCGCAGCAUUGCCCA-GCa -3'
miRNA:   3'- -CCU-----ACaagCGCGUCGUGAUGGGUgCG- -5'
13164 5' -53.7 NC_003401.1 + 125289 1.15 0.001726
Target:  5'- aGGAUGUUCGCGCAGCACUACCCACGCa -3'
miRNA:   3'- -CCUACAAGCGCGUCGUGAUGGGUGCG- -5'
13164 5' -53.7 NC_003401.1 + 85874 0.66 0.961266
Target:  5'- cGGUGUgucCGCGCGugugcGCGCUccGCCUugaguuGCGCa -3'
miRNA:   3'- cCUACAa--GCGCGU-----CGUGA--UGGG------UGCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.