Results 1 - 20 of 27 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 119777 | 0.67 | 0.913584 |
Target: 5'- aGGGUGUcggcgaGCGCcGCACcggACCCAguuccCGCa -3' miRNA: 3'- -CCUACAag----CGCGuCGUGa--UGGGU-----GCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 19946 | 0.68 | 0.880568 |
Target: 5'- -uGUGUUCGCGaGGCGCgcgACCC-CGa -3' miRNA: 3'- ccUACAAGCGCgUCGUGa--UGGGuGCg -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 107181 | 0.69 | 0.865727 |
Target: 5'- gGGAUuUUCGCGCccguGUACUguuuuuugACCUugGCu -3' miRNA: 3'- -CCUAcAAGCGCGu---CGUGA--------UGGGugCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 117890 | 0.7 | 0.798202 |
Target: 5'- cGGggGUUCG-GCGGCGgUgGCaCCGCGCc -3' miRNA: 3'- -CCuaCAAGCgCGUCGUgA-UG-GGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 63677 | 0.7 | 0.78897 |
Target: 5'- cGGUGUUCGUGCcGC-CUGCaagaggCGCGCg -3' miRNA: 3'- cCUACAAGCGCGuCGuGAUGg-----GUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 94443 | 0.73 | 0.669505 |
Target: 5'- gGGAgcagcUGgg-GCGCAGCAUUGCCCA-GCa -3' miRNA: 3'- -CCU-----ACaagCGCGUCGUGAUGGGUgCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 125289 | 1.15 | 0.001726 |
Target: 5'- aGGAUGUUCGCGCAGCACUACCCACGCa -3' miRNA: 3'- -CCUACAAGCGCGUCGUGAUGGGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 128476 | 0.67 | 0.912982 |
Target: 5'- uGAUGUgcgCGUGCAGCGCcagcuCCCGgugacauUGCa -3' miRNA: 3'- cCUACAa--GCGCGUCGUGau---GGGU-------GCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 35496 | 0.66 | 0.95326 |
Target: 5'- uGAUGUUCGUaaGCGGCAUcagcgcgguuacuUGCuuCCAUGCc -3' miRNA: 3'- cCUACAAGCG--CGUCGUG-------------AUG--GGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 11851 | 0.66 | 0.949511 |
Target: 5'- ---aGUUCGCcggugGCcgaGGCGCUGCaCACGCg -3' miRNA: 3'- ccuaCAAGCG-----CG---UCGUGAUGgGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 20077 | 0.67 | 0.913584 |
Target: 5'- aGAUGUUUuuGCGGgACggGCgCCGCGCa -3' miRNA: 3'- cCUACAAGcgCGUCgUGa-UG-GGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 100755 | 0.67 | 0.940479 |
Target: 5'- gGGAUGUcuUCGaUGguGCACgGCuCUAUGCc -3' miRNA: 3'- -CCUACA--AGC-GCguCGUGaUG-GGUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 85874 | 0.66 | 0.961266 |
Target: 5'- cGGUGUgucCGCGCGugugcGCGCUccGCCUugaguuGCGCa -3' miRNA: 3'- cCUACAa--GCGCGU-----CGUGA--UGGG------UGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 52934 | 0.67 | 0.925085 |
Target: 5'- ---gGUUCGUGCAGCACacgUACCauuuuaAgGCa -3' miRNA: 3'- ccuaCAAGCGCGUCGUG---AUGGg-----UgCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 80285 | 0.71 | 0.779592 |
Target: 5'- gGGGUcGUagUCGC-CAGCACgACCCugGUu -3' miRNA: 3'- -CCUA-CA--AGCGcGUCGUGaUGGGugCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 9484 | 0.68 | 0.894491 |
Target: 5'- ------aCGCGCAGCugUcgGCCCuCGCc -3' miRNA: 3'- ccuacaaGCGCGUCGugA--UGGGuGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 8602 | 0.68 | 0.901097 |
Target: 5'- ------aCGaCGCuGCACUGCCuCACGCc -3' miRNA: 3'- ccuacaaGC-GCGuCGUGAUGG-GUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 90905 | 0.66 | 0.953665 |
Target: 5'- cGGAUGUgacCGCAGCGCUcugagugaACaaACGCc -3' miRNA: 3'- -CCUACAagcGCGUCGUGA--------UGggUGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 45778 | 0.66 | 0.945116 |
Target: 5'- --uUGuUUCGCGCAGUACgugugACCUcCGUc -3' miRNA: 3'- ccuAC-AAGCGCGUCGUGa----UGGGuGCG- -5' |
|||||||
13164 | 5' | -53.7 | NC_003401.1 | + | 23653 | 0.67 | 0.935595 |
Target: 5'- cGGcagGUg-GCGCcGCGCUuuccCCCACGCc -3' miRNA: 3'- -CCua-CAagCGCGuCGUGAu---GGGUGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home