miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13165 3' -54 NC_003401.1 + 30510 0.66 0.951959
Target:  5'- cCCACCGGCG-CCUcaaccUGGccucgcuccuGGGuGGGAGa -3'
miRNA:   3'- -GGUGGCUGCuGGA-----AUC----------UCCuCCCUUg -5'
13165 3' -54 NC_003401.1 + 121901 0.66 0.951959
Target:  5'- gCACUuGCGGCCcugauguugUUGGAGcGGGGGGCg -3'
miRNA:   3'- gGUGGcUGCUGG---------AAUCUCcUCCCUUG- -5'
13165 3' -54 NC_003401.1 + 122537 0.66 0.943275
Target:  5'- uUCGCCGGCGACa----AGGuaAGGGGGCc -3'
miRNA:   3'- -GGUGGCUGCUGgaaucUCC--UCCCUUG- -5'
13165 3' -54 NC_003401.1 + 94464 0.67 0.938573
Target:  5'- cCCACCcuc--CCUUGGAGaGAuGGGAGCa -3'
miRNA:   3'- -GGUGGcugcuGGAAUCUC-CU-CCCUUG- -5'
13165 3' -54 NC_003401.1 + 107164 0.67 0.933628
Target:  5'- gUACUGuuuuuUGACCUUGGcuaGAGGGGACg -3'
miRNA:   3'- gGUGGCu----GCUGGAAUCuc-CUCCCUUG- -5'
13165 3' -54 NC_003401.1 + 43942 0.67 0.923004
Target:  5'- cCCACCGACGucaACC-UAGccGAGGuGACg -3'
miRNA:   3'- -GGUGGCUGC---UGGaAUCucCUCCcUUG- -5'
13165 3' -54 NC_003401.1 + 100713 0.67 0.911404
Target:  5'- cCCACCGGCGACgCUauccgguuUAcGGGGcGcGGAACc -3'
miRNA:   3'- -GGUGGCUGCUG-GA--------AU-CUCCuC-CCUUG- -5'
13165 3' -54 NC_003401.1 + 14332 0.68 0.90524
Target:  5'- gCuCCGGCG-CCggcAGGGGcGGGAGCa -3'
miRNA:   3'- gGuGGCUGCuGGaa-UCUCCuCCCUUG- -5'
13165 3' -54 NC_003401.1 + 52412 0.68 0.88532
Target:  5'- uCCACCuaauaauguCGuCCUUGGGGGAcucuucuuccacGGGAACa -3'
miRNA:   3'- -GGUGGcu-------GCuGGAAUCUCCU------------CCCUUG- -5'
13165 3' -54 NC_003401.1 + 14229 0.68 0.88532
Target:  5'- aCCGCgGACGcCCgggggcgcUAGAGGGugucGGGGACc -3'
miRNA:   3'- -GGUGgCUGCuGGa-------AUCUCCU----CCCUUG- -5'
13165 3' -54 NC_003401.1 + 18039 0.68 0.878216
Target:  5'- aCACCGGCGGCCgcgUAuuGGGGGucuACg -3'
miRNA:   3'- gGUGGCUGCUGGa--AUcuCCUCCcu-UG- -5'
13165 3' -54 NC_003401.1 + 119774 0.71 0.758241
Target:  5'- aCGCCGACGGCCUccgccaaucUGGccGGAGGcGGCg -3'
miRNA:   3'- gGUGGCUGCUGGA---------AUCu-CCUCCcUUG- -5'
13165 3' -54 NC_003401.1 + 62963 0.72 0.708709
Target:  5'- -gACCGAa-ACCaUGGAGGAcGGGAGCg -3'
miRNA:   3'- ggUGGCUgcUGGaAUCUCCU-CCCUUG- -5'
13165 3' -54 NC_003401.1 + 132780 0.75 0.544437
Target:  5'- aCCACCuuucggGGCGGCg-UGGGGGAGGGGAg -3'
miRNA:   3'- -GGUGG------CUGCUGgaAUCUCCUCCCUUg -5'
13165 3' -54 NC_003401.1 + 125798 1.12 0.002742
Target:  5'- uCCACCGACGACCUUAGAGGAGGGAACa -3'
miRNA:   3'- -GGUGGCUGCUGGAAUCUCCUCCCUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.