miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13166 3' -51.9 NC_003401.1 + 12189 0.66 0.97946
Target:  5'- -cCCUCGaCCGG---UUGCAGAAACAc -3'
miRNA:   3'- guGGAGC-GGCUccaAACGUCUUUGUc -5'
13166 3' -51.9 NC_003401.1 + 132683 0.66 0.974434
Target:  5'- gCGCCUCGgCGGGGcccgGCGcGggGCGc -3'
miRNA:   3'- -GUGGAGCgGCUCCaaa-CGU-CuuUGUc -5'
13166 3' -51.9 NC_003401.1 + 89672 0.67 0.968569
Target:  5'- aGCCUcCGCCGGagcGGgaggagGCAGggGCGu -3'
miRNA:   3'- gUGGA-GCGGCU---CCaaa---CGUCuuUGUc -5'
13166 3' -51.9 NC_003401.1 + 17878 0.67 0.965303
Target:  5'- aCGCCUCGCCGgAGacgcGCAGGgguccaccgGGCAGg -3'
miRNA:   3'- -GUGGAGCGGC-UCcaaaCGUCU---------UUGUC- -5'
13166 3' -51.9 NC_003401.1 + 28224 0.67 0.961442
Target:  5'- cCGCCgUUGCCGgcaucgaGGGUggcGCAGAAACGu -3'
miRNA:   3'- -GUGG-AGCGGC-------UCCAaa-CGUCUUUGUc -5'
13166 3' -51.9 NC_003401.1 + 72991 0.67 0.954092
Target:  5'- aGCCgCGgaGGGGUUUGUAGucACAGg -3'
miRNA:   3'- gUGGaGCggCUCCAAACGUCuuUGUC- -5'
13166 3' -51.9 NC_003401.1 + 106884 0.68 0.935672
Target:  5'- gGCUaCGCCGGcGUUUGCGGGuuuGGCGGg -3'
miRNA:   3'- gUGGaGCGGCUcCAAACGUCU---UUGUC- -5'
13166 3' -51.9 NC_003401.1 + 112419 0.68 0.92492
Target:  5'- -uCUUCGCCGAGcgcGUUUGCguccAGAGACAc -3'
miRNA:   3'- guGGAGCGGCUC---CAAACG----UCUUUGUc -5'
13166 3' -51.9 NC_003401.1 + 60497 0.69 0.906849
Target:  5'- gACUaCGCCGAGGUgucUGUGGAguuuAACGGa -3'
miRNA:   3'- gUGGaGCGGCUCCAa--ACGUCU----UUGUC- -5'
13166 3' -51.9 NC_003401.1 + 88942 0.72 0.784873
Target:  5'- aCACCUucgggcacaCGCCGuAGGgcugGCAGGGACGGc -3'
miRNA:   3'- -GUGGA---------GCGGC-UCCaaa-CGUCUUUGUC- -5'
13166 3' -51.9 NC_003401.1 + 125952 1.08 0.006578
Target:  5'- cCACCUCGCCGAGGUUUGCAGAAACAGc -3'
miRNA:   3'- -GUGGAGCGGCUCCAAACGUCUUUGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.