miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13166 5' -54.7 NC_003401.1 + 132662 0.66 0.930302
Target:  5'- gUCgGggcGCGGCGCCGcCGGgcucGGCCGg -3'
miRNA:   3'- gAGaCaaaCGUUGCGGCaGCU----CCGGC- -5'
13166 5' -54.7 NC_003401.1 + 128441 0.66 0.930302
Target:  5'- cCUCUaaccGCAACGUUcuaUCGAGGCCGc -3'
miRNA:   3'- -GAGAcaaaCGUUGCGGc--AGCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 20387 0.67 0.907377
Target:  5'- -gUUGagUGcCAGCGCCGcgaguuucgCGGGGCCGa -3'
miRNA:   3'- gaGACaaAC-GUUGCGGCa--------GCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 100212 0.67 0.887641
Target:  5'- gUCgccccUUGCcguaaAACGUCGUCGAGGUCGu -3'
miRNA:   3'- gAGaca--AACG-----UUGCGGCAGCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 124506 0.67 0.880593
Target:  5'- uCUCUGggugacGCAGgGCCGUCcuauaGAGGCUc -3'
miRNA:   3'- -GAGACaaa---CGUUgCGGCAG-----CUCCGGc -5'
13166 5' -54.7 NC_003401.1 + 21840 0.68 0.865819
Target:  5'- ---cGUUUGCGugGCUGgaaUCGcGGCCGc -3'
miRNA:   3'- gagaCAAACGUugCGGC---AGCuCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 22223 0.68 0.865819
Target:  5'- -gUUGUUUGUuuACGCUGUuaCGAGcGCCGg -3'
miRNA:   3'- gaGACAAACGu-UGCGGCA--GCUC-CGGC- -5'
13166 5' -54.7 NC_003401.1 + 103127 0.68 0.842053
Target:  5'- -------aGCGAcCGCCGUcCGAGGCCa -3'
miRNA:   3'- gagacaaaCGUU-GCGGCA-GCUCCGGc -5'
13166 5' -54.7 NC_003401.1 + 11234 0.68 0.833728
Target:  5'- -aCUGggccagcGCGACGuuGgCGGGGCCGg -3'
miRNA:   3'- gaGACaaa----CGUUGCggCaGCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 94810 0.69 0.825215
Target:  5'- uUUUGaacUGCucauGAUGCCGUgGAGGCCGc -3'
miRNA:   3'- gAGACaa-ACG----UUGCGGCAgCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 100301 0.7 0.78011
Target:  5'- uUCUGUUuauaUGCGGCGaCaaaGcCGGGGCCGu -3'
miRNA:   3'- gAGACAA----ACGUUGC-Gg--CaGCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 39102 0.7 0.770643
Target:  5'- uCUCUGUUUGCAuaGCcCUGUCcaAGGCCu -3'
miRNA:   3'- -GAGACAAACGU--UGcGGCAGc-UCCGGc -5'
13166 5' -54.7 NC_003401.1 + 111335 0.7 0.751336
Target:  5'- uUCUGcccacgUUGCcgaaaaGACGCCGagGAGGCUGg -3'
miRNA:   3'- gAGACa-----AACG------UUGCGGCagCUCCGGC- -5'
13166 5' -54.7 NC_003401.1 + 125918 1.09 0.0036
Target:  5'- aCUCUGUUUGCAACGCCGUCGAGGCCGc -3'
miRNA:   3'- -GAGACAAACGUUGCGGCAGCUCCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.