miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13167 5' -52.2 NC_003401.1 + 94729 0.66 0.972498
Target:  5'- -aGCGUUAGGCGcgGCCAGGAg----- -3'
miRNA:   3'- caCGCGGUCCGCa-CGGUUUUgaaacu -5'
13167 5' -52.2 NC_003401.1 + 21488 0.66 0.969499
Target:  5'- -cGCGCCuuuuuGGCG-GCgCAGGGCUUcGGg -3'
miRNA:   3'- caCGCGGu----CCGCaCG-GUUUUGAAaCU- -5'
13167 5' -52.2 NC_003401.1 + 80418 0.66 0.969499
Target:  5'- -gGCGCCAGGUa-GCCAugGCUg--- -3'
miRNA:   3'- caCGCGGUCCGcaCGGUuuUGAaacu -5'
13167 5' -52.2 NC_003401.1 + 132302 0.66 0.962815
Target:  5'- -cGCGCCGGGCGccGCCGGccucccccGGCUc--- -3'
miRNA:   3'- caCGCGGUCCGCa-CGGUU--------UUGAaacu -5'
13167 5' -52.2 NC_003401.1 + 95249 0.66 0.962815
Target:  5'- -aGgGCguGuGUGUGCCGGAGCUUUu- -3'
miRNA:   3'- caCgCGguC-CGCACGGUUUUGAAAcu -5'
13167 5' -52.2 NC_003401.1 + 27605 0.66 0.959116
Target:  5'- -cGCGCCAGcGCGggggGCaGAGGCUgaagGAa -3'
miRNA:   3'- caCGCGGUC-CGCa---CGgUUUUGAaa--CU- -5'
13167 5' -52.2 NC_003401.1 + 74179 0.66 0.959116
Target:  5'- uUGCGCCgcGGGCGgucuCCGGuucgguuuGGCUUUGAg -3'
miRNA:   3'- cACGCGG--UCCGCac--GGUU--------UUGAAACU- -5'
13167 5' -52.2 NC_003401.1 + 82527 0.68 0.931629
Target:  5'- cGUGCGCCAacGCGUGUCGugcauuuAACUuggUUGAc -3'
miRNA:   3'- -CACGCGGUc-CGCACGGUu------UUGA---AACU- -5'
13167 5' -52.2 NC_003401.1 + 9221 0.68 0.926137
Target:  5'- -aGCacaGUCAGGCGUGCCGuGGACUa--- -3'
miRNA:   3'- caCG---CGGUCCGCACGGU-UUUGAaacu -5'
13167 5' -52.2 NC_003401.1 + 107018 0.68 0.91436
Target:  5'- uGUGCGUCGGGUGUggcGCCGugGCUc--- -3'
miRNA:   3'- -CACGCGGUCCGCA---CGGUuuUGAaacu -5'
13167 5' -52.2 NC_003401.1 + 43476 0.68 0.91436
Target:  5'- aUGUGCacagGGGCGUGCguGAGCUUa-- -3'
miRNA:   3'- cACGCGg---UCCGCACGguUUUGAAacu -5'
13167 5' -52.2 NC_003401.1 + 24747 0.69 0.872841
Target:  5'- -aGCGCgGGGCGUGUUAAGcggGCUUg-- -3'
miRNA:   3'- caCGCGgUCCGCACGGUUU---UGAAacu -5'
13167 5' -52.2 NC_003401.1 + 43046 0.7 0.857046
Target:  5'- -cGCGCCAGGUcgcaGUGCCAGGGa----- -3'
miRNA:   3'- caCGCGGUCCG----CACGGUUUUgaaacu -5'
13167 5' -52.2 NC_003401.1 + 104826 0.7 0.848807
Target:  5'- --uCGCCGGGCGcGCCGGAACg---- -3'
miRNA:   3'- cacGCGGUCCGCaCGGUUUUGaaacu -5'
13167 5' -52.2 NC_003401.1 + 74948 0.7 0.831688
Target:  5'- -aGCGcCCAGGCGgcggGCCAAggUguuuaccgUUGAu -3'
miRNA:   3'- caCGC-GGUCCGCa---CGGUUuuGa-------AACU- -5'
13167 5' -52.2 NC_003401.1 + 93294 0.71 0.775825
Target:  5'- aUGCGCgGGGUGUGCCu-GGCUa--- -3'
miRNA:   3'- cACGCGgUCCGCACGGuuUUGAaacu -5'
13167 5' -52.2 NC_003401.1 + 132837 0.71 0.775825
Target:  5'- -cGCGCCGGGCcccGCCGAGGCg---- -3'
miRNA:   3'- caCGCGGUCCGca-CGGUUUUGaaacu -5'
13167 5' -52.2 NC_003401.1 + 126198 1.09 0.004996
Target:  5'- gGUGCGCCAGGCGUGCCAAAACUUUGAc -3'
miRNA:   3'- -CACGCGGUCCGCACGGUUUUGAAACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.