miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13168 5' -58.7 NC_003401.1 + 125654 0.66 0.75404
Target:  5'- gGUCGUCgguggagACGGCCGCgaCGUCGAacccgacguuGGUGAAg -3'
miRNA:   3'- -CAGUAG-------UGCCGGUG--GCGGCU----------CCACUU- -5'
13168 5' -58.7 NC_003401.1 + 105637 0.66 0.735603
Target:  5'- -cCcgCGCGGuCCAaCGCCGAGGcGAGa -3'
miRNA:   3'- caGuaGUGCC-GGUgGCGGCUCCaCUU- -5'
13168 5' -58.7 NC_003401.1 + 80496 0.66 0.715845
Target:  5'- -cCAU-GCGGCUACCGCCGuGGg--- -3'
miRNA:   3'- caGUAgUGCCGGUGGCGGCuCCacuu -5'
13168 5' -58.7 NC_003401.1 + 118346 0.67 0.665357
Target:  5'- ----cCGCGguGCCGCCGCCGGGGUc-- -3'
miRNA:   3'- caguaGUGC--CGGUGGCGGCUCCAcuu -5'
13168 5' -58.7 NC_003401.1 + 18187 0.67 0.665357
Target:  5'- ----aCGCGGCCGCCGgUGuGGGUGGg -3'
miRNA:   3'- caguaGUGCCGGUGGCgGC-UCCACUu -5'
13168 5' -58.7 NC_003401.1 + 80388 0.67 0.665357
Target:  5'- -cCAUgGCGGacggaCCACCGCUcuGAGGUGGg -3'
miRNA:   3'- caGUAgUGCC-----GGUGGCGG--CUCCACUu -5'
13168 5' -58.7 NC_003401.1 + 50022 0.67 0.664337
Target:  5'- -aCAUCAgcgaacuCGGCCGCCGuCCGGGGc--- -3'
miRNA:   3'- caGUAGU-------GCCGGUGGC-GGCUCCacuu -5'
13168 5' -58.7 NC_003401.1 + 125958 0.68 0.634669
Target:  5'- ----cCugGGCCACCucGCCGAGGUu-- -3'
miRNA:   3'- caguaGugCCGGUGG--CGGCUCCAcuu -5'
13168 5' -58.7 NC_003401.1 + 125094 0.71 0.438382
Target:  5'- cGUgAUgGCGGCCACgGCCGAGuUGGc -3'
miRNA:   3'- -CAgUAgUGCCGGUGgCGGCUCcACUu -5'
13168 5' -58.7 NC_003401.1 + 119893 0.74 0.323395
Target:  5'- ---cUCGCGGCCGCCGCCGAGu---- -3'
miRNA:   3'- caguAGUGCCGGUGGCGGCUCcacuu -5'
13168 5' -58.7 NC_003401.1 + 126603 1.06 0.001966
Target:  5'- cGUCAUCACGGCCACCGCCGAGGUGAAg -3'
miRNA:   3'- -CAGUAGUGCCGGUGGCGGCUCCACUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.