miRNA display CGI


Results 1 - 14 of 14 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13169 3' -53.6 NC_003401.1 + 111664 0.66 0.948964
Target:  5'- aUUAGgccGCGCAgaugUUCgUCGCGCACg -3'
miRNA:   3'- cAGUCaccCGCGUaa--AAG-AGCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 104884 0.66 0.929391
Target:  5'- --aAGUGGgGCGCGcug-C-CGCGCACg -3'
miRNA:   3'- cagUCACC-CGCGUaaaaGaGCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 125167 0.66 0.923856
Target:  5'- -gCAGUGGGCGUAcgUgccgcccgagCUUGCGgACa -3'
miRNA:   3'- caGUCACCCGCGUaaAa---------GAGCGCgUG- -5'
13169 3' -53.6 NC_003401.1 + 27167 0.67 0.918063
Target:  5'- aUCGGUGuGGCGCAagagccUCUCGUacaggcgaGCGCu -3'
miRNA:   3'- cAGUCAC-CCGCGUaaa---AGAGCG--------CGUG- -5'
13169 3' -53.6 NC_003401.1 + 96392 0.67 0.90571
Target:  5'- --gAGUGGGCggGCAaaggCUCGuCGCGCa -3'
miRNA:   3'- cagUCACCCG--CGUaaaaGAGC-GCGUG- -5'
13169 3' -53.6 NC_003401.1 + 30217 0.67 0.892346
Target:  5'- ---cGUGGGgGCG---UCUgGCGCGCg -3'
miRNA:   3'- caguCACCCgCGUaaaAGAgCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 15032 0.67 0.892346
Target:  5'- -cCAGgcgGGGCGUGg---CgcgCGCGCACg -3'
miRNA:   3'- caGUCa--CCCGCGUaaaaGa--GCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 118621 0.68 0.877256
Target:  5'- gGUCGGUGaacgggaGGCGCGccg-CUUGCGUGCg -3'
miRNA:   3'- -CAGUCAC-------CCGCGUaaaaGAGCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 68699 0.68 0.854721
Target:  5'- ----cUGGGCGCAU--UCU-GCGCACg -3'
miRNA:   3'- cagucACCCGCGUAaaAGAgCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 36510 0.7 0.783699
Target:  5'- gGUCGGU-GGCGCAUUUggaucguauUCUUGCGUg- -3'
miRNA:   3'- -CAGUCAcCCGCGUAAA---------AGAGCGCGug -5'
13169 3' -53.6 NC_003401.1 + 44084 0.72 0.640063
Target:  5'- cGUCGGUGGGCGUcgUcUC-CGC-CACu -3'
miRNA:   3'- -CAGUCACCCGCGuaAaAGaGCGcGUG- -5'
13169 3' -53.6 NC_003401.1 + 48350 0.73 0.597609
Target:  5'- ---cGUGGGCGCAggcgcgucacguUUUcucgUCUCGCGCAUa -3'
miRNA:   3'- caguCACCCGCGU------------AAA----AGAGCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 109065 0.77 0.417981
Target:  5'- uUCAGaGGGCGUGUUgUCUCGUGUGCa -3'
miRNA:   3'- cAGUCaCCCGCGUAAaAGAGCGCGUG- -5'
13169 3' -53.6 NC_003401.1 + 128105 1.11 0.002736
Target:  5'- cGUCAGUGGGCGCAUUUUCUCGCGCACg -3'
miRNA:   3'- -CAGUCACCCGCGUAAAAGAGCGCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.