miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13169 5' -46.3 NC_003401.1 + 103913 0.66 0.999917
Target:  5'- ----cAGCAUcuCGGCGGCcgaacgGCUCCGCc -3'
miRNA:   3'- gauaaUUGUGuuGUCGCUG------UGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 17958 0.66 0.999917
Target:  5'- cCUG-UAACGCAACAGgcuuaGGCAggCCACc -3'
miRNA:   3'- -GAUaAUUGUGUUGUCg----CUGUgaGGUG- -5'
13169 5' -46.3 NC_003401.1 + 123377 0.66 0.999917
Target:  5'- -----uGCACAGCucgGGCGGCACgCCGg -3'
miRNA:   3'- gauaauUGUGUUG---UCGCUGUGaGGUg -5'
13169 5' -46.3 NC_003401.1 + 76927 0.66 0.999902
Target:  5'- -aAUUGAUugGGCAGCGACcgcaguguggccaaaACUaCACg -3'
miRNA:   3'- gaUAAUUGugUUGUCGCUG---------------UGAgGUG- -5'
13169 5' -46.3 NC_003401.1 + 41025 0.66 0.999891
Target:  5'- --uUUGACAgAGCGGCGGCcgugGCU-CACg -3'
miRNA:   3'- gauAAUUGUgUUGUCGCUG----UGAgGUG- -5'
13169 5' -46.3 NC_003401.1 + 69592 0.66 0.999891
Target:  5'- -----cGCAUGGCGGcCGGCuCUCCGCc -3'
miRNA:   3'- gauaauUGUGUUGUC-GCUGuGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 122115 0.66 0.999891
Target:  5'- ----aGGCGCGGCAgggggcGUGGCACggCCGCg -3'
miRNA:   3'- gauaaUUGUGUUGU------CGCUGUGa-GGUG- -5'
13169 5' -46.3 NC_003401.1 + 68868 0.66 0.999856
Target:  5'- ----cAACAUAugAGaCGACGC-CCGCc -3'
miRNA:   3'- gauaaUUGUGUugUC-GCUGUGaGGUG- -5'
13169 5' -46.3 NC_003401.1 + 58910 0.66 0.999813
Target:  5'- ---aUAGCGuCGACcuuGGCGGCAUaCCACg -3'
miRNA:   3'- gauaAUUGU-GUUG---UCGCUGUGaGGUG- -5'
13169 5' -46.3 NC_003401.1 + 14475 0.66 0.999813
Target:  5'- -cGUUGGCG-AGCAGC-ACGuCUCCGCg -3'
miRNA:   3'- gaUAAUUGUgUUGUCGcUGU-GAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 128400 0.66 0.999813
Target:  5'- aUAU--GCGCcGCGGUGAUGCUCC-Cg -3'
miRNA:   3'- gAUAauUGUGuUGUCGCUGUGAGGuG- -5'
13169 5' -46.3 NC_003401.1 + 41961 0.66 0.999759
Target:  5'- gUGUUGugACu-CAGCGGgACcCCGCg -3'
miRNA:   3'- gAUAAUugUGuuGUCGCUgUGaGGUG- -5'
13169 5' -46.3 NC_003401.1 + 12065 0.66 0.999759
Target:  5'- ---aUAACAUc-CAGCGAUACUUCAg -3'
miRNA:   3'- gauaAUUGUGuuGUCGCUGUGAGGUg -5'
13169 5' -46.3 NC_003401.1 + 122807 0.66 0.999759
Target:  5'- ----aAACGCAcuauGCGGCGguccccguGCACUCUACc -3'
miRNA:   3'- gauaaUUGUGU----UGUCGC--------UGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 31123 0.67 0.999606
Target:  5'- gCUAUUGugACAACGaacGCGu--CUCCAUg -3'
miRNA:   3'- -GAUAAUugUGUUGU---CGCuguGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 52655 0.67 0.999502
Target:  5'- --cUUAACGCAGCGGCcgagaGACAUggaccucaCCACa -3'
miRNA:   3'- gauAAUUGUGUUGUCG-----CUGUGa-------GGUG- -5'
13169 5' -46.3 NC_003401.1 + 15803 0.67 0.999491
Target:  5'- gCUAUcagGGCGCGACGGUGAucaacccCAUUCCGg -3'
miRNA:   3'- -GAUAa--UUGUGUUGUCGCU-------GUGAGGUg -5'
13169 5' -46.3 NC_003401.1 + 39649 0.68 0.999016
Target:  5'- gUGUUAACGCAcgcaaccGCuAGCGACguuuccagaaACUUCACa -3'
miRNA:   3'- gAUAAUUGUGU-------UG-UCGCUG----------UGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 105108 0.68 0.998551
Target:  5'- ---cUAGCAgAGCcGUGACGCUCC-Cg -3'
miRNA:   3'- gauaAUUGUgUUGuCGCUGUGAGGuG- -5'
13169 5' -46.3 NC_003401.1 + 1045 0.68 0.998433
Target:  5'- aCUAguagUAACACAuaguauuucaucgcAUGGCGccugcauACGCUCCACa -3'
miRNA:   3'- -GAUa---AUUGUGU--------------UGUCGC-------UGUGAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.