miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13169 5' -46.3 NC_003401.1 + 128070 1.11 0.015678
Target:  5'- gCUAUUAACACAACAGCGACACUCCACu -3'
miRNA:   3'- -GAUAAUUGUGUUGUCGCUGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 82234 0.75 0.922478
Target:  5'- -aAUUAGCGguACAGUGcuuuGCACUCCGCc -3'
miRNA:   3'- gaUAAUUGUguUGUCGC----UGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 16214 0.74 0.93921
Target:  5'- -cAUUAACAUAGCGgaaaccGUGACGCUCCGg -3'
miRNA:   3'- gaUAAUUGUGUUGU------CGCUGUGAGGUg -5'
13169 5' -46.3 NC_003401.1 + 122759 0.74 0.94896
Target:  5'- -cAUUAACGCugcuGCuGGCGACGCUugCCACg -3'
miRNA:   3'- gaUAAUUGUGu---UG-UCGCUGUGA--GGUG- -5'
13169 5' -46.3 NC_003401.1 + 15044 0.74 0.953421
Target:  5'- -----cGCGCGACGGCGACGCggugaUCCAg -3'
miRNA:   3'- gauaauUGUGUUGUCGCUGUG-----AGGUg -5'
13169 5' -46.3 NC_003401.1 + 94629 0.72 0.979901
Target:  5'- -cAUUGACAaugaUAACuGCGGC-CUCCACg -3'
miRNA:   3'- gaUAAUUGU----GUUGuCGCUGuGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 19315 0.71 0.987846
Target:  5'- ------cCACAACGGCGAUAUUCaCGCc -3'
miRNA:   3'- gauaauuGUGUUGUCGCUGUGAG-GUG- -5'
13169 5' -46.3 NC_003401.1 + 104731 0.71 0.989387
Target:  5'- -----uGCGCGGCAGCG-CGCcCCACu -3'
miRNA:   3'- gauaauUGUGUUGUCGCuGUGaGGUG- -5'
13169 5' -46.3 NC_003401.1 + 60668 0.71 0.989387
Target:  5'- cCUAUUGucagGCGCAcccccgACGGCGACACgaucgCCAg -3'
miRNA:   3'- -GAUAAU----UGUGU------UGUCGCUGUGa----GGUg -5'
13169 5' -46.3 NC_003401.1 + 54424 0.7 0.992009
Target:  5'- --uUUAGCAUAcGCAGCGuaaaucgggucACACUCCAUc -3'
miRNA:   3'- gauAAUUGUGU-UGUCGC-----------UGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 56227 0.7 0.992009
Target:  5'- ---aUGugGCGGuCAGUGGCACUaCCGCu -3'
miRNA:   3'- gauaAUugUGUU-GUCGCUGUGA-GGUG- -5'
13169 5' -46.3 NC_003401.1 + 18600 0.69 0.995709
Target:  5'- -cGUUGuCGCGuagggACAcGUGACACUCCGCc -3'
miRNA:   3'- gaUAAUuGUGU-----UGU-CGCUGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 60164 0.69 0.996947
Target:  5'- ---cUGACAUAACuuuGCG-UGCUCCGCg -3'
miRNA:   3'- gauaAUUGUGUUGu--CGCuGUGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 46149 0.69 0.996947
Target:  5'- -aAUUAACGCGGCGGCacauGACGCUaucugguaCGCg -3'
miRNA:   3'- gaUAAUUGUGUUGUCG----CUGUGAg-------GUG- -5'
13169 5' -46.3 NC_003401.1 + 96415 0.69 0.996947
Target:  5'- -gAUUuuUACAGCGGCGugAUUCgCACc -3'
miRNA:   3'- gaUAAuuGUGUUGUCGCugUGAG-GUG- -5'
13169 5' -46.3 NC_003401.1 + 12504 0.69 0.997445
Target:  5'- ----cGACGUGACGGCGAC-CUUCACg -3'
miRNA:   3'- gauaaUUGUGUUGUCGCUGuGAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 83962 0.69 0.997873
Target:  5'- ----cGGCACAauuugaugagGCAGCGGCGCUUCu- -3'
miRNA:   3'- gauaaUUGUGU----------UGUCGCUGUGAGGug -5'
13169 5' -46.3 NC_003401.1 + 48417 0.68 0.998239
Target:  5'- aCUA--GAUACcaaguGGCAGCGGCAagaUCCGCg -3'
miRNA:   3'- -GAUaaUUGUG-----UUGUCGCUGUg--AGGUG- -5'
13169 5' -46.3 NC_003401.1 + 59333 0.68 0.998239
Target:  5'- uUAUauACACAGaCAGCcuGCugUCCACa -3'
miRNA:   3'- gAUAauUGUGUU-GUCGc-UGugAGGUG- -5'
13169 5' -46.3 NC_003401.1 + 12382 0.68 0.998239
Target:  5'- ---gUGGCAgAACGGgGACAcCUCUACc -3'
miRNA:   3'- gauaAUUGUgUUGUCgCUGU-GAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.