miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1317 5' -56.2 NC_001331.1 + 415 0.67 0.130457
Target:  5'- uCUCcGGACGCCAAGGCGuaaGCcuuAGGAGg -3'
miRNA:   3'- uGGGuUCUGUGGUUCCGCc--CG---UUCUC- -5'
1317 5' -56.2 NC_001331.1 + 1963 0.67 0.110717
Target:  5'- cCCCGAccacGACcaGCC-GGGCGGGCAgccGGGGu -3'
miRNA:   3'- uGGGUU----CUG--UGGuUCCGCCCGU---UCUC- -5'
1317 5' -56.2 NC_001331.1 + 3535 1.08 0.000045
Target:  5'- gACCCAAGACACCAAGGCGGGCAAGAGc -3'
miRNA:   3'- -UGGGUUCUGUGGUUCCGCCCGUUCUC- -5'
1317 5' -56.2 NC_001331.1 + 7019 0.66 0.15841
Target:  5'- uCCCGAG-CACUc-GGCGG-CAAGAGc -3'
miRNA:   3'- uGGGUUCuGUGGuuCCGCCcGUUCUC- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.