miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13170 3' -55.8 NC_003401.1 + 119962 0.66 0.882958
Target:  5'- cAGGGuGGGCCCGAUG-GCGuCCGuUGGUa -3'
miRNA:   3'- cUCUC-UCUGGGUUAUaCGC-GGC-GCCA- -5'
13170 3' -55.8 NC_003401.1 + 132461 0.66 0.875736
Target:  5'- cGGGGGAGGCCgGcg--GCGCCcggcgcGCGGg -3'
miRNA:   3'- -CUCUCUCUGGgUuauaCGCGG------CGCCa -5'
13170 3' -55.8 NC_003401.1 + 98544 0.66 0.867533
Target:  5'- cGGGAaAGACCCGAUuaauggaGUGCGCCacaGGg -3'
miRNA:   3'- -CUCUcUCUGGGUUA-------UACGCGGcg-CCa -5'
13170 3' -55.8 NC_003401.1 + 132417 0.67 0.85592
Target:  5'- -cGGGGGACCCucgccccgggcgcaaGAUG-GCgGCCGCGGc -3'
miRNA:   3'- cuCUCUCUGGG---------------UUAUaCG-CGGCGCCa -5'
13170 3' -55.8 NC_003401.1 + 21117 0.67 0.844656
Target:  5'- gGAGGGAGAgCCAuccgcGCGagguCCGCGGg -3'
miRNA:   3'- -CUCUCUCUgGGUuaua-CGC----GGCGCCa -5'
13170 3' -55.8 NC_003401.1 + 77889 0.67 0.844656
Target:  5'- --cAGAGACgCAAUG-GCugGCCGCGGUc -3'
miRNA:   3'- cucUCUCUGgGUUAUaCG--CGGCGCCA- -5'
13170 3' -55.8 NC_003401.1 + 104963 0.68 0.782901
Target:  5'- cAGAGGGGCuCCuccGUGCGCCG-GGa -3'
miRNA:   3'- cUCUCUCUG-GGuuaUACGCGGCgCCa -5'
13170 3' -55.8 NC_003401.1 + 22702 0.68 0.754155
Target:  5'- -uGAGGGGCCUuuucGUGUGCGUuuuuuuUGCGGUg -3'
miRNA:   3'- cuCUCUCUGGGu---UAUACGCG------GCGCCA- -5'
13170 3' -55.8 NC_003401.1 + 132662 0.68 0.754155
Target:  5'- gGAGGGGGGCCgGGgcccgggGCGCCucgGCGGg -3'
miRNA:   3'- -CUCUCUCUGGgUUaua----CGCGG---CGCCa -5'
13170 3' -55.8 NC_003401.1 + 18008 0.73 0.518908
Target:  5'- cGGGGAGAUCCGcgcgucccUGUGCGCCGCGu- -3'
miRNA:   3'- cUCUCUCUGGGUu-------AUACGCGGCGCca -5'
13170 3' -55.8 NC_003401.1 + 128413 1.08 0.002767
Target:  5'- cGAGAGAGACCCAAUAUGCGCCGCGGUg -3'
miRNA:   3'- -CUCUCUCUGGGUUAUACGCGGCGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.