Results 1 - 11 of 11 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13170 | 3' | -55.8 | NC_003401.1 | + | 128413 | 1.08 | 0.002767 |
Target: 5'- cGAGAGAGACCCAAUAUGCGCCGCGGUg -3' miRNA: 3'- -CUCUCUCUGGGUUAUACGCGGCGCCA- -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 18008 | 0.73 | 0.518908 |
Target: 5'- cGGGGAGAUCCGcgcgucccUGUGCGCCGCGu- -3' miRNA: 3'- cUCUCUCUGGGUu-------AUACGCGGCGCca -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 22702 | 0.68 | 0.754155 |
Target: 5'- -uGAGGGGCCUuuucGUGUGCGUuuuuuuUGCGGUg -3' miRNA: 3'- cuCUCUCUGGGu---UAUACGCG------GCGCCA- -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 132662 | 0.68 | 0.754155 |
Target: 5'- gGAGGGGGGCCgGGgcccgggGCGCCucgGCGGg -3' miRNA: 3'- -CUCUCUCUGGgUUaua----CGCGG---CGCCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 104963 | 0.68 | 0.782901 |
Target: 5'- cAGAGGGGCuCCuccGUGCGCCG-GGa -3' miRNA: 3'- cUCUCUCUG-GGuuaUACGCGGCgCCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 77889 | 0.67 | 0.844656 |
Target: 5'- --cAGAGACgCAAUG-GCugGCCGCGGUc -3' miRNA: 3'- cucUCUCUGgGUUAUaCG--CGGCGCCA- -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 21117 | 0.67 | 0.844656 |
Target: 5'- gGAGGGAGAgCCAuccgcGCGagguCCGCGGg -3' miRNA: 3'- -CUCUCUCUgGGUuaua-CGC----GGCGCCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 132417 | 0.67 | 0.85592 |
Target: 5'- -cGGGGGACCCucgccccgggcgcaaGAUG-GCgGCCGCGGc -3' miRNA: 3'- cuCUCUCUGGG---------------UUAUaCG-CGGCGCCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 98544 | 0.66 | 0.867533 |
Target: 5'- cGGGAaAGACCCGAUuaauggaGUGCGCCacaGGg -3' miRNA: 3'- -CUCUcUCUGGGUUA-------UACGCGGcg-CCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 132461 | 0.66 | 0.875736 |
Target: 5'- cGGGGGAGGCCgGcg--GCGCCcggcgcGCGGg -3' miRNA: 3'- -CUCUCUCUGGgUuauaCGCGG------CGCCa -5' |
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13170 | 3' | -55.8 | NC_003401.1 | + | 119962 | 0.66 | 0.882958 |
Target: 5'- cAGGGuGGGCCCGAUG-GCGuCCGuUGGUa -3' miRNA: 3'- cUCUC-UCUGGGUUAUaCGC-GGC-GCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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