Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13170 | 5' | -46.9 | NC_003401.1 | + | 71180 | 0.66 | 0.999774 |
Target: 5'- -aGC-ACGGAcACGg--UGCCGCaGGCc -3' miRNA: 3'- aaUGuUGCCU-UGUauaAUGGCGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 120209 | 0.66 | 0.99971 |
Target: 5'- -cGCGGCGGAGgAUuuuuCCG-UGGCg -3' miRNA: 3'- aaUGUUGCCUUgUAuaauGGCgACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 86500 | 0.66 | 0.99971 |
Target: 5'- -gACAGCgGGGACGaGggACCGuCUGGa -3' miRNA: 3'- aaUGUUG-CCUUGUaUaaUGGC-GACCg -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 27322 | 0.66 | 0.99971 |
Target: 5'- gUGCuACGGA----GUUGCgGCUGGUc -3' miRNA: 3'- aAUGuUGCCUuguaUAAUGgCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 63363 | 0.66 | 0.99963 |
Target: 5'- aUGCuugGCGGAG-GUGUUAUCGaCUGGUu -3' miRNA: 3'- aAUGu--UGCCUUgUAUAAUGGC-GACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 45264 | 0.66 | 0.99963 |
Target: 5'- --gUAAUGGGAgGUu---CCGCUGGUg -3' miRNA: 3'- aauGUUGCCUUgUAuaauGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 8739 | 0.66 | 0.999532 |
Target: 5'- -gACGACGGcGCGUcagccgGUcGCCGCcacagGGCg -3' miRNA: 3'- aaUGUUGCCuUGUA------UAaUGGCGa----CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 77975 | 0.66 | 0.999532 |
Target: 5'- -gAUGACGGGguGCAUca-ACCGUUGGUu -3' miRNA: 3'- aaUGUUGCCU--UGUAuaaUGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 132665 | 0.66 | 0.999532 |
Target: 5'- -gGCGuCGGGGCGcGgcGCCGCcgGGCu -3' miRNA: 3'- aaUGUuGCCUUGUaUaaUGGCGa-CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 40707 | 0.66 | 0.999412 |
Target: 5'- --uCGACGGAu--UGUU-CCGCUGGg -3' miRNA: 3'- aauGUUGCCUuguAUAAuGGCGACCg -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 48591 | 0.66 | 0.999412 |
Target: 5'- -gGCAACGGccGCGgaucUUGCCGCUGcCa -3' miRNA: 3'- aaUGUUGCCu-UGUau--AAUGGCGACcG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 118265 | 0.67 | 0.999267 |
Target: 5'- --uCAGCGGAACAUAUUcuCC-CcGGCu -3' miRNA: 3'- aauGUUGCCUUGUAUAAu-GGcGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 121921 | 0.67 | 0.999267 |
Target: 5'- gUUGgAGCGGGgggcGCGgGUgcgGCgGCUGGCg -3' miRNA: 3'- -AAUgUUGCCU----UGUaUAa--UGgCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 21631 | 0.67 | 0.999091 |
Target: 5'- -cGCAGCGG-ACG----GCCGC-GGCa -3' miRNA: 3'- aaUGUUGCCuUGUauaaUGGCGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 14289 | 0.67 | 0.999091 |
Target: 5'- ---aGugGGGGCGUGgu-CCGCgagGGCc -3' miRNA: 3'- aaugUugCCUUGUAUaauGGCGa--CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 22769 | 0.67 | 0.999091 |
Target: 5'- -cACGGC-GAGCGUGgcGCUGgUGGCa -3' miRNA: 3'- aaUGUUGcCUUGUAUaaUGGCgACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 40950 | 0.67 | 0.998629 |
Target: 5'- -gACAucCGGAACGUGUgccacguuuuUGCC-CUGGUa -3' miRNA: 3'- aaUGUu-GCCUUGUAUA----------AUGGcGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 132516 | 0.68 | 0.998332 |
Target: 5'- -gGCGGCcgGGGGCGgcg-GCCGCgGGCc -3' miRNA: 3'- aaUGUUG--CCUUGUauaaUGGCGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 56487 | 0.68 | 0.997982 |
Target: 5'- -gGCAcucACGGGACAUGUuuugcacaUAUCGCUGcauaGCa -3' miRNA: 3'- aaUGU---UGCCUUGUAUA--------AUGGCGAC----CG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 88502 | 0.68 | 0.997043 |
Target: 5'- -gGCGACGGGGagcaGUGUuggaugcUACgGCUGGUu -3' miRNA: 3'- aaUGUUGCCUUg---UAUA-------AUGgCGACCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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