miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13170 5' -46.9 NC_003401.1 + 20102 0.68 0.996543
Target:  5'- -cACcGCGGAGCcaaugGCCGC-GGCg -3'
miRNA:   3'- aaUGuUGCCUUGuauaaUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 33092 0.68 0.996543
Target:  5'- -cGCAACGGug---GUUuuuCCGCUGGUu -3'
miRNA:   3'- aaUGUUGCCuuguaUAAu--GGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 14701 0.69 0.99518
Target:  5'- ---uGACGGAACAcGUUcacgcACaCGCUGGUg -3'
miRNA:   3'- aaugUUGCCUUGUaUAA-----UG-GCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 24959 0.69 0.993408
Target:  5'- -cACAACGGcACuguauaugcaaGUAUUACaaGCUGGCa -3'
miRNA:   3'- aaUGUUGCCuUG-----------UAUAAUGg-CGACCG- -5'
13170 5' -46.9 NC_003401.1 + 86501 0.7 0.989812
Target:  5'- -cGCGGCGGGACAUcuccUGgaGUUGGCg -3'
miRNA:   3'- aaUGUUGCCUUGUAua--AUggCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 24750 0.7 0.988321
Target:  5'- -cGCAgcGCGGGGCGUGUUAa-GCgGGCu -3'
miRNA:   3'- aaUGU--UGCCUUGUAUAAUggCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 122561 0.71 0.980612
Target:  5'- -cGCGGCGGAACAgacuuuCCGCgguucgccGGCg -3'
miRNA:   3'- aaUGUUGCCUUGUauaau-GGCGa-------CCG- -5'
13170 5' -46.9 NC_003401.1 + 95122 0.73 0.950404
Target:  5'- aUACAACaGAcUAgug-GCCGCUGGCa -3'
miRNA:   3'- aAUGUUGcCUuGUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 64499 0.73 0.950404
Target:  5'- cUGCGGCcagGGAgaACcgGUUGCCGCgugGGCg -3'
miRNA:   3'- aAUGUUG---CCU--UGuaUAAUGGCGa--CCG- -5'
13170 5' -46.9 NC_003401.1 + 68632 0.73 0.940846
Target:  5'- cUGCAGCGGGGuCGUuaUACCGCcccaguUGGCc -3'
miRNA:   3'- aAUGUUGCCUU-GUAuaAUGGCG------ACCG- -5'
13170 5' -46.9 NC_003401.1 + 198 0.73 0.940846
Target:  5'- cUUGCuGAgGGGACAgUAggGCUGCUGGCu -3'
miRNA:   3'- -AAUG-UUgCCUUGU-AUaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 118685 0.73 0.940846
Target:  5'- -cGCAACGcGAGgG----GCCGCUGGCg -3'
miRNA:   3'- aaUGUUGC-CUUgUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 132933 0.73 0.940846
Target:  5'- cUUGCuGAgGGGACAgUAggGCUGCUGGCu -3'
miRNA:   3'- -AAUG-UUgCCUUGU-AUaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 88435 0.73 0.935649
Target:  5'- gUACGuccaGGAGCAUGccGCCGgUGGCa -3'
miRNA:   3'- aAUGUug--CCUUGUAUaaUGGCgACCG- -5'
13170 5' -46.9 NC_003401.1 + 126353 0.75 0.905443
Target:  5'- -aGCGACGGAgGCAUggugGUUACCGCUaucgagauGGCc -3'
miRNA:   3'- aaUGUUGCCU-UGUA----UAAUGGCGA--------CCG- -5'
13170 5' -46.9 NC_003401.1 + 16349 0.81 0.603049
Target:  5'- aUGCAugGGAGgAg---GCCGCUGGCc -3'
miRNA:   3'- aAUGUugCCUUgUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 128377 1.1 0.015483
Target:  5'- gUUACAACGGAACAUAUUACCGCUGGCc -3'
miRNA:   3'- -AAUGUUGCCUUGUAUAAUGGCGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.