miRNA display CGI


Results 1 - 20 of 37 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13170 5' -46.9 NC_003401.1 + 88435 0.73 0.935649
Target:  5'- gUACGuccaGGAGCAUGccGCCGgUGGCa -3'
miRNA:   3'- aAUGUug--CCUUGUAUaaUGGCgACCG- -5'
13170 5' -46.9 NC_003401.1 + 27322 0.66 0.99971
Target:  5'- gUGCuACGGA----GUUGCgGCUGGUc -3'
miRNA:   3'- aAUGuUGCCUuguaUAAUGgCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 45264 0.66 0.99963
Target:  5'- --gUAAUGGGAgGUu---CCGCUGGUg -3'
miRNA:   3'- aauGUUGCCUUgUAuaauGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 8739 0.66 0.999532
Target:  5'- -gACGACGGcGCGUcagccgGUcGCCGCcacagGGCg -3'
miRNA:   3'- aaUGUUGCCuUGUA------UAaUGGCGa----CCG- -5'
13170 5' -46.9 NC_003401.1 + 121921 0.67 0.999267
Target:  5'- gUUGgAGCGGGgggcGCGgGUgcgGCgGCUGGCg -3'
miRNA:   3'- -AAUgUUGCCU----UGUaUAa--UGgCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 118265 0.67 0.999267
Target:  5'- --uCAGCGGAACAUAUUcuCC-CcGGCu -3'
miRNA:   3'- aauGUUGCCUUGUAUAAu-GGcGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 21631 0.67 0.999091
Target:  5'- -cGCAGCGG-ACG----GCCGC-GGCa -3'
miRNA:   3'- aaUGUUGCCuUGUauaaUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 56487 0.68 0.997982
Target:  5'- -gGCAcucACGGGACAUGUuuugcacaUAUCGCUGcauaGCa -3'
miRNA:   3'- aaUGU---UGCCUUGUAUA--------AUGGCGAC----CG- -5'
13170 5' -46.9 NC_003401.1 + 33092 0.68 0.996543
Target:  5'- -cGCAACGGug---GUUuuuCCGCUGGUu -3'
miRNA:   3'- aaUGUUGCCuuguaUAAu--GGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 20102 0.68 0.996543
Target:  5'- -cACcGCGGAGCcaaugGCCGC-GGCg -3'
miRNA:   3'- aaUGuUGCCUUGuauaaUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 68632 0.73 0.940846
Target:  5'- cUGCAGCGGGGuCGUuaUACCGCcccaguUGGCc -3'
miRNA:   3'- aAUGUUGCCUU-GUAuaAUGGCG------ACCG- -5'
13170 5' -46.9 NC_003401.1 + 198 0.73 0.940846
Target:  5'- cUUGCuGAgGGGACAgUAggGCUGCUGGCu -3'
miRNA:   3'- -AAUG-UUgCCUUGU-AUaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 118685 0.73 0.940846
Target:  5'- -cGCAACGcGAGgG----GCCGCUGGCg -3'
miRNA:   3'- aaUGUUGC-CUUgUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 132933 0.73 0.940846
Target:  5'- cUUGCuGAgGGGACAgUAggGCUGCUGGCu -3'
miRNA:   3'- -AAUG-UUgCCUUGU-AUaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 64499 0.73 0.950404
Target:  5'- cUGCGGCcagGGAgaACcgGUUGCCGCgugGGCg -3'
miRNA:   3'- aAUGUUG---CCU--UGuaUAAUGGCGa--CCG- -5'
13170 5' -46.9 NC_003401.1 + 86501 0.7 0.989812
Target:  5'- -cGCGGCGGGACAUcuccUGgaGUUGGCg -3'
miRNA:   3'- aaUGUUGCCUUGUAua--AUggCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 71180 0.66 0.999774
Target:  5'- -aGC-ACGGAcACGg--UGCCGCaGGCc -3'
miRNA:   3'- aaUGuUGCCU-UGUauaAUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 16349 0.81 0.603049
Target:  5'- aUGCAugGGAGgAg---GCCGCUGGCc -3'
miRNA:   3'- aAUGUugCCUUgUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 126353 0.75 0.905443
Target:  5'- -aGCGACGGAgGCAUggugGUUACCGCUaucgagauGGCc -3'
miRNA:   3'- aaUGUUGCCU-UGUA----UAAUGGCGA--------CCG- -5'
13170 5' -46.9 NC_003401.1 + 95122 0.73 0.950404
Target:  5'- aUACAACaGAcUAgug-GCCGCUGGCa -3'
miRNA:   3'- aAUGUUGcCUuGUauaaUGGCGACCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.