Results 21 - 37 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
13170 | 5' | -46.9 | NC_003401.1 | + | 77975 | 0.66 | 0.999532 |
Target: 5'- -gAUGACGGGguGCAUca-ACCGUUGGUu -3' miRNA: 3'- aaUGUUGCCU--UGUAuaaUGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 132665 | 0.66 | 0.999532 |
Target: 5'- -gGCGuCGGGGCGcGgcGCCGCcgGGCu -3' miRNA: 3'- aaUGUuGCCUUGUaUaaUGGCGa-CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 63363 | 0.66 | 0.99963 |
Target: 5'- aUGCuugGCGGAG-GUGUUAUCGaCUGGUu -3' miRNA: 3'- aAUGu--UGCCUUgUAUAAUGGC-GACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 86500 | 0.66 | 0.99971 |
Target: 5'- -gACAGCgGGGACGaGggACCGuCUGGa -3' miRNA: 3'- aaUGUUG-CCUUGUaUaaUGGC-GACCg -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 120209 | 0.66 | 0.99971 |
Target: 5'- -cGCGGCGGAGgAUuuuuCCG-UGGCg -3' miRNA: 3'- aaUGUUGCCUUgUAuaauGGCgACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 40950 | 0.67 | 0.998629 |
Target: 5'- -gACAucCGGAACGUGUgccacguuuuUGCC-CUGGUa -3' miRNA: 3'- aaUGUu-GCCUUGUAUA----------AUGGcGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 132516 | 0.68 | 0.998332 |
Target: 5'- -gGCGGCcgGGGGCGgcg-GCCGCgGGCc -3' miRNA: 3'- aaUGUUG--CCUUGUauaaUGGCGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 128377 | 1.1 | 0.015483 |
Target: 5'- gUUACAACGGAACAUAUUACCGCUGGCc -3' miRNA: 3'- -AAUGUUGCCUUGUAUAAUGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 16349 | 0.81 | 0.603049 |
Target: 5'- aUGCAugGGAGgAg---GCCGCUGGCc -3' miRNA: 3'- aAUGUugCCUUgUauaaUGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 126353 | 0.75 | 0.905443 |
Target: 5'- -aGCGACGGAgGCAUggugGUUACCGCUaucgagauGGCc -3' miRNA: 3'- aaUGUUGCCU-UGUA----UAAUGGCGA--------CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 95122 | 0.73 | 0.950404 |
Target: 5'- aUACAACaGAcUAgug-GCCGCUGGCa -3' miRNA: 3'- aAUGUUGcCUuGUauaaUGGCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 122561 | 0.71 | 0.980612 |
Target: 5'- -cGCGGCGGAACAgacuuuCCGCgguucgccGGCg -3' miRNA: 3'- aaUGUUGCCUUGUauaau-GGCGa-------CCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 24750 | 0.7 | 0.988321 |
Target: 5'- -cGCAgcGCGGGGCGUGUUAa-GCgGGCu -3' miRNA: 3'- aaUGU--UGCCUUGUAUAAUggCGaCCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 24959 | 0.69 | 0.993408 |
Target: 5'- -cACAACGGcACuguauaugcaaGUAUUACaaGCUGGCa -3' miRNA: 3'- aaUGUUGCCuUG-----------UAUAAUGg-CGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 14701 | 0.69 | 0.99518 |
Target: 5'- ---uGACGGAACAcGUUcacgcACaCGCUGGUg -3' miRNA: 3'- aaugUUGCCUUGUaUAA-----UG-GCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 88502 | 0.68 | 0.997043 |
Target: 5'- -gGCGACGGGGagcaGUGUuggaugcUACgGCUGGUu -3' miRNA: 3'- aaUGUUGCCUUg---UAUA-------AUGgCGACCG- -5' |
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13170 | 5' | -46.9 | NC_003401.1 | + | 71180 | 0.66 | 0.999774 |
Target: 5'- -aGC-ACGGAcACGg--UGCCGCaGGCc -3' miRNA: 3'- aaUGuUGCCU-UGUauaAUGGCGaCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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