miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13170 5' -46.9 NC_003401.1 + 24750 0.7 0.988321
Target:  5'- -cGCAgcGCGGGGCGUGUUAa-GCgGGCu -3'
miRNA:   3'- aaUGU--UGCCUUGUAUAAUggCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 63363 0.66 0.99963
Target:  5'- aUGCuugGCGGAG-GUGUUAUCGaCUGGUu -3'
miRNA:   3'- aAUGu--UGCCUUgUAUAAUGGC-GACCG- -5'
13170 5' -46.9 NC_003401.1 + 120209 0.66 0.99971
Target:  5'- -cGCGGCGGAGgAUuuuuCCG-UGGCg -3'
miRNA:   3'- aaUGUUGCCUUgUAuaauGGCgACCG- -5'
13170 5' -46.9 NC_003401.1 + 71180 0.66 0.999774
Target:  5'- -aGC-ACGGAcACGg--UGCCGCaGGCc -3'
miRNA:   3'- aaUGuUGCCU-UGUauaAUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 132516 0.68 0.998332
Target:  5'- -gGCGGCcgGGGGCGgcg-GCCGCgGGCc -3'
miRNA:   3'- aaUGUUG--CCUUGUauaaUGGCGaCCG- -5'
13170 5' -46.9 NC_003401.1 + 128377 1.1 0.015483
Target:  5'- gUUACAACGGAACAUAUUACCGCUGGCc -3'
miRNA:   3'- -AAUGUUGCCUUGUAUAAUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 16349 0.81 0.603049
Target:  5'- aUGCAugGGAGgAg---GCCGCUGGCc -3'
miRNA:   3'- aAUGUugCCUUgUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 126353 0.75 0.905443
Target:  5'- -aGCGACGGAgGCAUggugGUUACCGCUaucgagauGGCc -3'
miRNA:   3'- aaUGUUGCCU-UGUA----UAAUGGCGA--------CCG- -5'
13170 5' -46.9 NC_003401.1 + 95122 0.73 0.950404
Target:  5'- aUACAACaGAcUAgug-GCCGCUGGCa -3'
miRNA:   3'- aAUGUUGcCUuGUauaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 132665 0.66 0.999532
Target:  5'- -gGCGuCGGGGCGcGgcGCCGCcgGGCu -3'
miRNA:   3'- aaUGUuGCCUUGUaUaaUGGCGa-CCG- -5'
13170 5' -46.9 NC_003401.1 + 48591 0.66 0.999412
Target:  5'- -gGCAACGGccGCGgaucUUGCCGCUGcCa -3'
miRNA:   3'- aaUGUUGCCu-UGUau--AAUGGCGACcG- -5'
13170 5' -46.9 NC_003401.1 + 22769 0.67 0.999091
Target:  5'- -cACGGC-GAGCGUGgcGCUGgUGGCa -3'
miRNA:   3'- aaUGUUGcCUUGUAUaaUGGCgACCG- -5'
13170 5' -46.9 NC_003401.1 + 24959 0.69 0.993408
Target:  5'- -cACAACGGcACuguauaugcaaGUAUUACaaGCUGGCa -3'
miRNA:   3'- aaUGUUGCCuUG-----------UAUAAUGg-CGACCG- -5'
13170 5' -46.9 NC_003401.1 + 40707 0.66 0.999412
Target:  5'- --uCGACGGAu--UGUU-CCGCUGGg -3'
miRNA:   3'- aauGUUGCCUuguAUAAuGGCGACCg -5'
13170 5' -46.9 NC_003401.1 + 14701 0.69 0.99518
Target:  5'- ---uGACGGAACAcGUUcacgcACaCGCUGGUg -3'
miRNA:   3'- aaugUUGCCUUGUaUAA-----UG-GCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 14289 0.67 0.999091
Target:  5'- ---aGugGGGGCGUGgu-CCGCgagGGCc -3'
miRNA:   3'- aaugUugCCUUGUAUaauGGCGa--CCG- -5'
13170 5' -46.9 NC_003401.1 + 77975 0.66 0.999532
Target:  5'- -gAUGACGGGguGCAUca-ACCGUUGGUu -3'
miRNA:   3'- aaUGUUGCCU--UGUAuaaUGGCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 86500 0.66 0.99971
Target:  5'- -gACAGCgGGGACGaGggACCGuCUGGa -3'
miRNA:   3'- aaUGUUG-CCUUGUaUaaUGGC-GACCg -5'
13170 5' -46.9 NC_003401.1 + 88502 0.68 0.997043
Target:  5'- -gGCGACGGGGagcaGUGUuggaugcUACgGCUGGUu -3'
miRNA:   3'- aaUGUUGCCUUg---UAUA-------AUGgCGACCG- -5'
13170 5' -46.9 NC_003401.1 + 40950 0.67 0.998629
Target:  5'- -gACAucCGGAACGUGUgccacguuuuUGCC-CUGGUa -3'
miRNA:   3'- aaUGUu-GCCUUGUAUA----------AUGGcGACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.