miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
13171 3' -55.6 NC_003401.1 + 133718 0.66 0.887646
Target:  5'- -gAUCUGGGCcgggUGCCcGGCGguccGGGCGGg -3'
miRNA:   3'- ugUAGACUCG----ACGGuCUGC----UCUGCCa -5'
13171 3' -55.6 NC_003401.1 + 40444 0.66 0.865727
Target:  5'- gACG-CUGGGCUGCgCGu-UGGGACGGUc -3'
miRNA:   3'- -UGUaGACUCGACG-GUcuGCUCUGCCA- -5'
13171 3' -55.6 NC_003401.1 + 118603 0.67 0.841847
Target:  5'- gACAUCgacgGGGUUGCCGGuCGGuGaACGGg -3'
miRNA:   3'- -UGUAGa---CUCGACGGUCuGCU-C-UGCCa -5'
13171 3' -55.6 NC_003401.1 + 19647 0.67 0.816189
Target:  5'- cGCGccCUgGAGCUGCCGGGCGGGGugacagUGGa -3'
miRNA:   3'- -UGUa-GA-CUCGACGGUCUGCUCU------GCCa -5'
13171 3' -55.6 NC_003401.1 + 58121 0.7 0.669505
Target:  5'- cACAcUUGAGCcaGUCAGGCGGGugGGa -3'
miRNA:   3'- -UGUaGACUCGa-CGGUCUGCUCugCCa -5'
13171 3' -55.6 NC_003401.1 + 108659 0.71 0.638287
Target:  5'- gGCGUUaaacGGGUUGCCGcACGGGACGGUc -3'
miRNA:   3'- -UGUAGa---CUCGACGGUcUGCUCUGCCA- -5'
13171 3' -55.6 NC_003401.1 + 64520 0.71 0.617435
Target:  5'- uGCcgCgUGGGCgguaGCCAGGgGAGACGGa -3'
miRNA:   3'- -UGuaG-ACUCGa---CGGUCUgCUCUGCCa -5'
13171 3' -55.6 NC_003401.1 + 133510 0.72 0.555398
Target:  5'- gGCGUCcGAGg-GCCAGACGAGgacACGGg -3'
miRNA:   3'- -UGUAGaCUCgaCGGUCUGCUC---UGCCa -5'
13171 3' -55.6 NC_003401.1 + 795 0.72 0.555398
Target:  5'- gGCGUCcGAGg-GCCAGACGAGgacACGGg -3'
miRNA:   3'- -UGUAGaCUCgaCGGUCUGCUC---UGCCa -5'
13171 3' -55.6 NC_003401.1 + 15046 0.73 0.495304
Target:  5'- gGCAUCUcuGGCcGCCAGGCGGGGCGuGg -3'
miRNA:   3'- -UGUAGAc-UCGaCGGUCUGCUCUGC-Ca -5'
13171 3' -55.6 NC_003401.1 + 128567 1.07 0.003603
Target:  5'- gACAUCUGAGCUGCCAGACGAGACGGUu -3'
miRNA:   3'- -UGUAGACUCGACGGUCUGCUCUGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.